Team, Visitors, External Collaborators
Overall Objectives
Research Program
Highlights of the Year
New Software and Platforms
New Results
Bilateral Contracts and Grants with Industry
Partnerships and Cooperations
Dissemination
Bibliography
XML PDF e-pub
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Bibliography

Major publications by the team in recent years
[1]
J. Albella Martínez, S. Imperiale, P. Joly, J. Rodríguez.
Solving 2D linear isotropic elastodynamics by means of scalar potentials: a new challenge for finite elements, in: Journal of Scientific Computing, 2018. [ DOI : 10.1007/s10915-018-0768-9 ]
https://hal.inria.fr/hal-01803536
[2]
M. Caruel, P. Moireau, D. Chapelle.
Stochastic modeling of chemical-mechanical coupling in striated muscles, in: Biomechanics and Modeling in Mechanobiology, 2018, forthcoming. [ DOI : 10.1007/s10237-018-1102-z ]
https://hal.inria.fr/hal-01928279
[3]
R. Chabiniok, P. Moireau, P.-F. Lesault, A. Rahmouni, J.-F. Deux, D. Chapelle.
Estimation of tissue contractility from cardiac cine-MRI using a biomechanical heart model, in: Biomechanics and Modeling in Mechanobiology, 2012, vol. 11, no 5, pp. 609-630. [ DOI : 10.1007/s10237-011-0337-8 ]
http://hal.inria.fr/hal-00654541
[4]
D. Chapelle, K. Bathe.
The Finite Element Analysis of Shells - Fundamentals - Second Edition, Computational Fluid and Solid Mechanics, Springer, 2011, 410 p. [ DOI : 10.1007/978-3-642-16408-8 ]
http://hal.inria.fr/hal-00654533
[5]
D. Chapelle, N. Cîndea, P. Moireau.
Improving convergence in numerical analysis using observers - The wave-like equation case, in: Mathematical Models and Methods in Applied Sciences, 2012, vol. 22, no 12. [ DOI : 10.1142/S0218202512500406 ]
http://hal.inria.fr/inria-00621052
[6]
D. Chapelle, P. Le Tallec, P. Moireau, M. Sorine.
An energy-preserving muscle tissue model: formulation and compatible discretizations, in: International Journal for Multiscale Computational Engineering, 2012, vol. 10, no 2, pp. 189-211. [ DOI : 10.1615/IntJMultCompEng.2011002360 ]
http://hal.inria.fr/hal-00678772
[7]
D. Chapelle, P. Moireau.
General coupling of porous flows and hyperelastic formulations – From thermodynamics principles to energy balance and compatible time schemes, in: European Journal of Mechanics - B/Fluids, 2014, vol. 46, pp. 82-96, Updated version of previously published research report. [ DOI : 10.1016/j.euromechflu.2014.02.009 ]
https://hal.inria.fr/inria-00520612
[8]
A. Collin, S. Imperiale.
Mathematical analysis and 2-scale convergence of a heterogeneous microscopic bidomain model, in: Mathematical Models and Methods in Applied Sciences, 2018, forthcoming.
https://hal.inria.fr/hal-01759914
[9]
B. Lynch, S. Bancelin, C. Bonod-Bidaud, J.-B. Gueusquin, F. Ruggiero, M.-C. Schanne-Klein, J.-M. Allain.
A novel microstructural interpretation for the biomechanics of mouse skin derived from multiscale characterization, in: Acta Biomaterialia, 2017, vol. 50, pp. 302-311. [ DOI : 10.1016/j.actbio.2016.12.051 ]
https://hal.archives-ouvertes.fr/hal-01531321
[10]
P. Moireau.
A Discrete-time Optimal Filtering Approach for Non-linear Systems as a Stable Discretization of the Mortensen Observer, in: ESAIM: Control, Optimisation and Calculus of Variations, 2017, forthcoming.
https://hal.inria.fr/hal-01671271
[11]
M. Sermesant, R. Chabiniok, P. Chinchapatnam, T. Mansi, F. Billet, P. Moireau, J.-M. Peyrat, K. C. Wong, J. Relan, K. S. Rhode, M. Ginks, P. Lambiase, H. Delingette, M. Sorine, C. A. Rinaldi, D. Chapelle, R. Razavi, N. Ayache.
Patient-Specific Electromechanical Models of the Heart for Prediction of the Acute Effects of Pacing in CRT: a First Validation, in: Medical Image Analysis, 2012, vol. 16, no 1, pp. 201-215. [ DOI : 10.1016/j.media.2011.07.003 ]
http://hal.inria.fr/inria-00616191
Publications of the year

Doctoral Dissertations and Habilitation Theses

[12]
F. Caforio.
Mathematical modelling and numerical simulation of elastic wave propagation in soft tissues with application to cardiac elastography, Université Paris-Saclay, January 2019.
https://pastel.archives-ouvertes.fr/tel-02262282
[13]
F. Kimmig.
Modélisation multi-échelles de la contraction musculaire : De la dynamique stochastique des moteurs moléculaires à la mécanique des milieux continus, Université Paris-Saclay, December 2019.
https://tel.archives-ouvertes.fr/tel-02439432

Articles in International Peer-Reviewed Journals

[14]
J. Albella Martínez, H. Ben Dhia, S. Imperiale, J. Rodríguez.
Mathematical and numerical study of transient wave scattering by obstacles with the Arlequin Method, in: SIAM Journal on Numerical Analysis, 2019, forthcoming. [ DOI : 10.1137/19M1263959 ]
https://hal.inria.fr/hal-01898420
[15]
D. H. Baffet, M. J. Grote, S. Imperiale, M. Kachanovska.
Energy Decay and Stability of a Perfectly Matched Layer For the Wave Equation, in: Journal of Scientific Computing, November 2019. [ DOI : 10.1007/s10915-019-01089-9 ]
https://hal.archives-ouvertes.fr/hal-01865484
[16]
B. Burtschell, P. Moireau, D. Chapelle.
Numerical analysis for an energy-stable total discretization of a poromechanics model with inf-sup stability, in: Acta Mathematicae Applicatae Sinica, 2019, vol. 35, no 1, pp. 28-53. [ DOI : 10.1007/s10255-019-0799-5 ]
https://hal.inria.fr/hal-01928312
[17]
F. Caforio, S. Imperiale.
High-order discrete fourier transform for the solution of the Poisson equation, in: SIAM Journal on Scientific Computing, June 2019, vol. 41, no 5, pp. A2747-A2771. [ DOI : 10.1137/18M1225410 ]
https://hal.inria.fr/hal-01914257
[18]
M. Caruel, P. Moireau, D. Chapelle.
Stochastic modeling of chemical-mechanical coupling in striated muscles, in: Biomechanics and Modeling in Mechanobiology, 2019. [ DOI : 10.1007/s10237-018-1102-z ]
https://hal.inria.fr/hal-01928279
[19]
J. Chabassier, J. Diaz, S. Imperiale.
Construction and analysis of fourth order, energy consistent, family of explicit time discretizations for dissipative linear wave equations, in: ESAIM: Mathematical Modelling and Numerical Analysis, 2019, forthcoming.
https://hal.inria.fr/hal-01894238
[20]
F. Clément, B. Laroche, F. Robin.
Analysis and numerical simulation of an inverse problem for a structured cell population dynamics model, in: Mathematical Biosciences & Engineering, 2019, vol. 16, no 4, pp. 3018-3046. [ DOI : 10.3934/mbe.2019150 ]
https://hal.archives-ouvertes.fr/hal-02154588
[21]
F. Clément, F. Robin, R. Yvinec.
Analysis and calibration of a linear model for structured cell populations with unidirectional motion : Application to the morphogenesis of ovarian follicles, in: SIAM Journal on Applied Mathematics, February 2019, vol. 79, no 1, pp. 207-229, https://arxiv.org/abs/1712.05372. [ DOI : 10.1137/17M1161336 ]
https://hal.archives-ouvertes.fr/hal-01852560
[22]
A. Collin, S. Imperiale, P. Moireau, J.-F. Gerbeau, D. Chapelle.
Apprehending the effects of mechanical deformations in cardiac electrophysiology - An homogenization approach, in: Mathematical Models and Methods in Applied Sciences, December 2019, vol. 29, no 13, pp. 2377-2417. [ DOI : 10.1142/S0218202519500490 ]
https://hal.inria.fr/hal-02267941
[23]
J. Diani, P. Le Tallec.
A fully equilibrated microsphere model with damage for rubberlike materials, in: Journal of the Mechanics and Physics of Solids, March 2019, vol. 124, pp. 702-713. [ DOI : 10.1016/j.jmps.2018.11.021 ]
https://hal.archives-ouvertes.fr/hal-01986861
[24]
G. Ducourthial, J. Affagard, M. Schmeltz, X. Solinas, M. Lopez‐Poncelas, C. Bonod-Bidaud, R. Rubio‐Amador, F. Ruggiero, J.-M. Allain, E. Beaurepaire, M.-C. Schanne-Klein.
Monitoring dynamic collagen reorganization during skin stretching with fast polarization‐resolved second harmonic generation imaging, in: Journal of Biophotonics, January 2019, vol. 12, no 5, e201800336 p, https://arxiv.org/abs/1904.09177. [ DOI : 10.1002/jbio.201800336 ]
https://hal.archives-ouvertes.fr/hal-02103594
[25]
H. N. T. Finsberg, J. Sundnes, C. Xi, L. C. Lee, X. Zhao, J. L. Tan, M. Genet, L. Zhong, S. T. Wall.
Computational quantification of patient specific changes in ventricular dynamics associated with pulmonary hypertension, in: AJP - Heart and Circulatory Physiology, 2019. [ DOI : 10.1152/ajpheart.00094.2019 ]
https://hal.archives-ouvertes.fr/hal-02375749
[26]
J.-M. Frachisse, S. Thomine, J.-M. Allain.
Calcium and plasma membrane force-gated ion channels behind development, in: Current Opinion in Plant Biology, 2019, vol. 53, pp. 57–64. [ DOI : 10.1016/j.pbi.2019.10.006 ]
https://hal.archives-ouvertes.fr/hal-02389243
[27]
M. Genet.
A relaxed growth modeling framework for controlling growth-induced residual stresses, in: Clinical Biomechanics, 2019. [ DOI : 10.1016/j.clinbiomech.2019.08.015 ]
https://hal.archives-ouvertes.fr/hal-02069113
[28]
M. Guichard, J.-M. Allain, M. W. Bianchi, J.-M. Frachisse.
Root Hair Sizer: an algorithm for high throughput recovery of different root hair and root developmental parameters, in: Plant Methods, December 2019, vol. 15, no 1. [ DOI : 10.1186/s13007-019-0483-z ]
https://hal.archives-ouvertes.fr/hal-02293640
[29]
S. Imperiale, P. Moireau, A. Tonnoir.
Analysis of an observer strategy for initial state reconstruction of wave-like systems in unbounded domains, in: ESAIM: Control, Optimisation and Calculus of Variations, April 2019. [ DOI : 10.1051/cocv/2019026 ]
https://hal.inria.fr/hal-01898440
[30]
F. Kimmig, D. Chapelle, P. Moireau.
Thermodynamic properties of muscle contraction models and associated discrete-time principles, in: Advanced Modeling and Simulation in Engineering Sciences, 2019, forthcoming. [ DOI : 10.1186/s40323-019-0128-9 ]
https://hal.inria.fr/hal-02065957
[31]
Z. Ma, H. Maitournam, P. Le Tallec.
An energy-based strategy for fatigue analysis in presence of general multi-axial time varying loadings, in: International Journal of Fatigue, March 2020, vol. 132, 105367 p. [ DOI : 10.1016/j.ijfatigue.2019.105367 ]
https://hal.archives-ouvertes.fr/hal-02421856
[32]
A. Marboeuf, A. Claisse, P. Le Tallec.
Conservative and entropy controlled remap for multi-material ALE simulations with space-staggered schemes, in: Journal of Computational Physics, August 2019, vol. 390, pp. 66-92. [ DOI : 10.1016/j.jcp.2019.04.017 ]
https://hal.archives-ouvertes.fr/hal-02421917
[33]
M. Postel, A. Karam, G. Pézeron, S. Schneider-Maunoury, F. Clément.
A multiscale mathematical model of cell dynamics during neurogenesis in the mouse cerebral cortex, in: BMC Bioinformatics, December 2019, vol. 20, no 1. [ DOI : 10.1186/s12859-019-3018-8 ]
https://hal.inria.fr/hal-01783141
[34]
C. Zhang, A. Collin, P. Moireau, A. Trouvé, M. Rochoux.
Front shape similarity measure for data-driven simulations of wildland fire spread based on state estimation: Application to the RxCADRE field-scale experiment, in: Proceedings of the Combustion Institute, 2019, vol. 37, no 3, pp. 4201-4209. [ DOI : 10.1016/j.proci.2018.07.112 ]
https://hal.inria.fr/hal-01969130

International Conferences with Proceedings

[35]
E. Berberoglu, C. T. Stoeck, P. Moireau, S. Kozerke, M. Genet.
Validation of Finite Element Image Registration-based Cardiac Strain Estimation from Magnetic Resonance Images, in: GAMM 2019 - 90th Annual Meeting of the International Association of Applied Mathematics and Mechanics, Vienna, Austria, PAMM proceedings in applied mathematics and mechanics, February 2019. [ DOI : 10.1002/pamm.201900418 ]
https://hal.archives-ouvertes.fr/hal-02375735
[36]
R. Chabiniok, G. Bureau, A. Groth, J. Tintera, J. Weese, D. Chapelle, P. Moireau.
Cardiac displacement tracking with data assimilation combining a biomechanical model and an automatic contour detection, in: FIMH 2019 - Proceedings of Functional Imaging and Modeling of Heart, Bordeaux, France, Lecture Notes in Computer Science (LNCS), June 2019, vol. 11504, pp. 405-414.
https://hal.archives-ouvertes.fr/hal-02186804
[37]
A. Gérard, A. Collin, G. Bureau, P. Moireau, Y. Coudière.
Model assessment through data assimilation of realistic data in cardiac electrophysiology, in: FIMH 2019 - 10th Functional Imaging and Modeling of the Heart, Bordeaux, France, June 2019.
https://hal.inria.fr/hal-02172102
[38]
A. Le Gall, F. Vallée, D. Chapelle, R. Chabiniok.
Minimally-invasive estimation of patient-specific end-systolic elastance using a biomechanical heart model, in: FIMH 2019 - 10th Functional Imaging and Modelling of the Heart, Bordeaux, France, June 2019.
https://hal.archives-ouvertes.fr/hal-02153611
[39]
L. C. Lee, M. Genet.
Validation of Equilibrated Warping-image registration with mechanical regularization-on 3D ultrasound images, in: FIMH 2019 - International Conference on Functional Imaging and Modeling of the Heart, Bordeaux, France, Lecture notes in computer science, Springer, May 2019, vol. 11504, pp. 334-341. [ DOI : 10.1007/978-3-030-21949-9_36 ]
https://hal.archives-ouvertes.fr/hal-02146580
[40]
B. Ruijsink, K. Zugaj, K. Pushparajah, R. Chabiniok.
Model-based indices of early-stage cardiovascular failure and its therapeutic management in Fontan patients, in: FIMH 2019 - 10th Functional Imaging and Modeling of Heart, Bordeaux, France, Lecture Notes in Computer Science (LNCS), June 2019, vol. 11504, pp. 379-387.
https://hal.archives-ouvertes.fr/hal-02186819

Conferences without Proceedings

[41]
G. Beck, S. Imperiale, P. Joly.
Effective models for non-perfectly conducting thin coaxial cables, in: Waves 2019 - 14th International Conference on Mathematical and Numerical Aspects of Wave Propagation, Vienna, Austria, 2019.
https://hal.archives-ouvertes.fr/hal-02414849
[42]
M. Genet.
Medical images registration with finite elements and mechanical regularization, in: GAMM 2019 - 90th Annual Meeting of the International Association of Applied Mathematics and Mechanics, Vienna, Austria, February 2019.
https://hal.archives-ouvertes.fr/hal-02069100
[43]
C. Patte, M. Genet, C. Fetita, P.-Y. Brillet, D. Chapelle.
Mécanique pulmonaire personnalisée : modélisation et estimation - Application à la fibrose pulmonaire, in: CSMA 2019 - 14ème Colloque National en Calcul des Structures, Giens, France, May 2019.
https://hal.archives-ouvertes.fr/hal-02068920
[44]
K. Škardová, M. Rambausek, R. Chabiniok, M. Genet.
Mechanical and Imaging Models-based Image Registration, in: VipIMAGE 2019 - VII ECCOMAS Thematic Conference on Computational Vision and Medical Image Processing, Porto, Portugal, 2019. [ DOI : 10.1007/978-3-030-32040-9_9 ]
https://hal.archives-ouvertes.fr/hal-02186828

Scientific Books (or Scientific Book chapters)

[45]
J.-M. Allain, B. Lynch, M.-C. Schanne-Klein.
Multiscale characterization of skin mechanics through in situ imaging, in: Skin Biophysics : From Experimental Characterisation to Advanced Modelling, G. Limbert (editor), Studies in Mechanobiology, Tissue Engineering and Biomaterials, Springer International Publishing, 2019, vol. 22, pp. 265-280. [ DOI : 10.1007/978-3-030-13279-8_8 ]
https://hal-polytechnique.archives-ouvertes.fr/hal-02114148
[46]
S. Bancelin, B. Lynch, C. Bonod-Bidaud, P. Dokládal, F. Ruggiero, J.-M. Allain, M.-C. Schanne-Klein.
Combination of Traction Assays and Multiphoton Imaging to Quantify Skin Biomechanics, in: Collagen : Methods and Protocols, I. Sagi, N. A. Afratis (editors), Methods in Molecular Biology, Humana Press, March 2019, vol. 1944, pp. 145-155. [ DOI : 10.1007/978-1-4939-9095-5_11 ]
https://hal-polytechnique.archives-ouvertes.fr/hal-02115604

Internal Reports

[47]
Y. Mocquard, F. Robin, B. Sericola, E. Anceaume.
Average-based Population Protocols : Explicit and Tight Bounds of the Convergence Time, Irisa, July 2019.
https://hal.archives-ouvertes.fr/hal-02178618

Patents

[48]
D. Chapelle, P. Moireau, M. Pernot, M. Tanter.
Dispositif cardiaque, 2019, no 1908859.
https://hal.inria.fr/hal-02262214

Other Publications

[49]
J. Albella Martínez, S. Imperiale, P. Joly, J. Rodríguez.
Numerical Analysis of a Method for Solving 2D Linear Isotropic Elastodynamics with Free Boundary Condition using Potentials and Finite Elements, November 2019, working paper or preprint. [ DOI : 10.1007/s10915-018-0768-9 ]
https://hal.inria.fr/hal-02345808
[50]
C. Bonnet, K. Chahour, F. Clément, M. Postel, R. Yvinec.
Multiscale population dynamics in reproductive biology: singular perturbation reduction in deterministic and stochastic models, March 2019, https://arxiv.org/abs/1903.08555 - working paper or preprint.
https://hal.inria.fr/hal-02075253
[51]
F. Caforio, S. Imperiale.
Mathematical analysis of a penalization strategy for incompressible elastodynamics, December 2019, working paper or preprint.
https://hal.inria.fr/hal-02389286
[52]
F. Caforio, S. Imperiale.
Mathematical modelling of transient shear wave elastography in the heart, March 2019, working paper or preprint.
https://hal.inria.fr/hal-01992069
[53]
J. Chabassier, S. Imperiale.
Construction and convergence analysis of conservative second order local time discretisation for wave equations based on domain decomposition, August 2019, working paper or preprint.
https://hal.inria.fr/hal-01894357
[54]
F. Clément, F. Robin, R. Yvinec.
Stochastic nonlinear model for somatic cell population dynamics during ovarian follicle activation, March 2019, https://arxiv.org/abs/1903.01316 - working paper or preprint.
https://hal.inria.fr/hal-02057983