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Publications of the year

Doctoral Dissertations and Habilitation Theses

R. Duchesne.
Erythroid differentiation in vitro under the lens of mathematical modelling, Université de Lyon, December 2019.

Articles in International Peer-Reviewed Journals

M. Adimy, A. Chekroun, T. Kuniya.
Coupled reaction-diffusion and difference system of cell-cycle dynamics for hematopoiesis process with Dirichlet boundary conditions, in: Australian Journal of Mathematical Analysis and Applications, November 2019, vol. 479, no 1, pp. 1030-1068. [ DOI : 10.1016/j.jmaa.2019.06.066 ]
M. Adimy, A. Chekroun, C. Pio Ferreira.
Global dynamics of a differential-difference system: a case of Kermack-McKendrick SIR model with age-structured protection phase, in: Mathematical Biosciences and Engineering, 2020, vol. 17, no 2, pp. 1329-1354. [ DOI : 10.3934/mbe.2020067 ]
P. Arner, S. Bernard, L. Appelsved, K.-Y. Fu, D. Andersson, M. Salehpour, A. Thorell, M. Rydén, K. Spalding.
Adipose lipid turnover and long-term changes in body weight, in: Nature Medicine, September 2019, vol. 25, no 9, pp. 1385-1389. [ DOI : 10.1038/s41591-019-0565-5 ]
M. A. Benchaib, A. Bouchnita, V. Volpert, A. Makhoute.
Mathematical Modeling Reveals That the Administration of EGF Can Promote the Elimination of Lymph Node Metastases by PD-1/PD-L1 Blockade, in: Frontiers in Bioengineering and Biotechnology, May 2019, vol. 7, pp. 1-18. [ DOI : 10.3389/fbioe.2019.00104 ]
N. Bessonov, A. Beuter, S. Trofimchuk, V. Volpert.
Cortical waves and post‐stroke brain stimulation, in: Mathematical Methods in the Applied Sciences, June 2019, vol. 42, no 11, pp. 3912-3928. [ DOI : 10.1002/mma.5620 ]
N. Bessonov, A. Beuter, S. Trofimchuk, V. Volpert.
Estimate of the travelling wave speed for an integro-differential equation, in: Applied Mathematics Letters, February 2019, vol. 88, pp. 103-110. [ DOI : 10.1016/j.aml.2018.07.037 ]
A. Bonnaffoux, U. Herbach, A. Richard, A. Guillemin, S. Gonin-Giraud, P.-A. Gros, O. Gandrillon.
WASABI: a dynamic iterative framework for gene regulatory network inference, in: BMC Bioinformatics, April 2019, vol. 20, no 1, pp. 1-19. [ DOI : 10.1186/s12859-019-2798-1 ]
A. Bouchnita, V. Volpert.
A multiscale model of platelet-fibrin thrombus growth in the flow, in: Computers & Fluids, April 2019, vol. 184, pp. 10-20. [ DOI : 10.1016/j.compfluid.2019.03.021 ]
L. Boullu, M. Adimy, F. Crauste, L. Pujo-Menjouet.
Oscillations and asymptotic convergence for a delay differential equation modeling platelet production, in: Discrete and Continuous Dynamical Systems - Series B, 2019, vol. 24, no 6, pp. 2417-2442. [ DOI : 10.3934/dcdsb.2018259 ]
L. Boullu, L. Pujo-Menjouet, J. Bélair.
Stability analysis of an equation with two delays and application to the production of platelets, in: Discrete and Continuous Dynamical Systems - Series S, 2019, pp. 1-24, forthcoming. [ DOI : 10.3934/dcdss.2020131 ]
L. Boullu, L. Pujo-Menjouet, J. Wu.
A model for megakaryopoiesis with state-dependent delay, in: SIAM Journal on Applied Mathematics, July 2019, vol. 79, no 4, pp. 1218–1243. [ DOI : 10.1137/18M1201020 ]
V. Calvez, T. Lepoutre, N. Meunier, N. Muller.
Non-linear analysis of a model for yeast cell communication, in: ESAIM: Mathematical Modelling and Numerical Analysis, 2019, pp. 1-32, forthcoming. [ DOI : 10.1051/m2an/2019065 ]
I. S. Ciuperca, M. Dumont, A. Lakmeche, P. Mazzocco, L. Pujo-Menjouet, H. Rezaei, L. Tine.
Alzheimer's disease and prion: An in vitro mathematical model, in: Discrete and Continuous Dynamical Systems - Series B, October 2019, vol. 24, no 10, pp. 5225-5260. [ DOI : 10.3934/dcdsb.2019057 ]
R. Duchesne, A. Guillemin, F. Crauste, O. Gandrillon.
Calibration, Selection and Identifiability Analysis of a Mathematical Model of the in vitro Erythropoiesis in Normal and Perturbed Contexts, in: In Silico Biology, May 2019, vol. 13, no 1-2, pp. 55-69. [ DOI : 10.3233/ISB-190471 ]
S. Girel, C. Arpin, J. Marvel, O. Gandrillon, F. Crauste.
Model-based assessment of the Role of Uneven Partitioning of Molecular Content on Heterogeneity and Regulation of Differentiation in CD8 T-cell Immune Responses, in: Frontiers in Immunology, 2019, pp. 1-41,, forthcoming. [ DOI : 10.3389/fimmu.2019.00230 ]
D. Grebennikov, A. Bouchnita, V. Volpert, N. Bessonov, A. Meyerhans, G. Bocharov.
Spatial Lymphocyte Dynamics in Lymph Nodes Predicts the Cytotoxic T Cell Frequency Needed for HIV Infection Control, in: Frontiers in Immunology, June 2019, vol. 10, pp. 1-15. [ DOI : 10.3389/fimmu.2019.01213 ]
A. Guillemin, R. Duchesne, F. Crauste, S. Gonin-Giraud, O. Gandrillon.
Drugs modulating stochastic gene expression affect the erythroid differentiation process, in: PLoS ONE, November 2019, vol. 14, no 11, pp. 1-19. [ DOI : 10.1371/journal.pone.0225166 ]
U. Herbach.
Stochastic Gene Expression with a Multistate Promoter: Breaking Down Exact Distributions, in: SIAM Journal on Applied Mathematics, June 2019, vol. 79, no 3, pp. 1007-1029. [ DOI : 10.1137/18M1181006 ]
T. Lepoutre.
Improved duality estimates: time discrete case and applications to a class of cross-diffusion systems, in: Communications in Mathematical Sciences, 2019, vol. 17, no 2, pp. 1-17,
M. Marion, V. Volpert.
Existence of Pulses for the System of Competition of Species, in: Journal of Dynamics and Differential Equations, September 2019, vol. 31, no 3, pp. 1653-1670. [ DOI : 10.1007/s10884-017-9582-6 ]
J. E. Mold, P. Réu, A. Olin, S. Bernard, J. Michaelsson, S. Rane, A. Yates, A. Khosravi, M. Salehpour, G. Possnert, P. Brodin, J. Frisén.
Cell generation dynamics underlying naïve T cell homeostasis in adult humans, in: PLoS Biology, October 2019, vol. 17, no 10, e3000383 p. [ DOI : 10.1101/635995 ]
N. Ratto, M. Marion, V. Volpert.
Existence of pulses for a reaction-diffusion system of blood coagulation in flow, in: Mathematical Biosciences and Engineering, 2019, vol. 16, no 5, pp. 4196-4212, forthcoming. [ DOI : 10.3934/mbe.2019209 ]
N. Ratto, M. Marion, V. Volpert.
Existence of pulses for a reaction-diffusion system of blood coagulation, in: Topological Methods in Nonlinear Analysis, 2019, forthcoming.
N. Ratto, M. Marion, V. Volpert.
Existence of Waves for a Bistable Reaction–Diffusion System with Delay, in: Journal of Dynamics and Differential Equations, 2019, vol. 16, no 5, pp. 4196-4212. [ DOI : 10.1007/s10884-019-09751-4 ]
A. Richard, E. Vallin, C. Romestaing, D. Roussel, O. Gandrillon, S. Gonin-Giraud.
Erythroid differentiation displays a peak of energy consumption concomitant with glycolytic metabolism rearrangements, in: PLoS ONE, September 2019, vol. 14, no 9, e0221472 p. [ DOI : 10.1371/journal.pone.0221472 ]
M. Sen, V. Volpert, V. Vougalter.
Existence of waves for a reaction–diffusion–dispersion system, in: Nonlinear Analysis: Theory, Methods and Applications, March 2019, vol. 180, pp. 52-66. [ DOI : 10.1016/ ]
S. Trofimchuk, V. Volpert.
Global continuation of monotone waves for bistable delayed equations with unimodal nonlinearities, in: Nonlinearity, July 2019, vol. 32, no 7, pp. 2593-2632. [ DOI : 10.1088/1361-6544/ab0e23 ]
M. Yeung, M. Djelloul, E. Steiner, S. Bernard, M. Salehpour, G. Possnert, L. Brundin, J. Frisén.
Dynamics of oligodendrocyte generation in multiple sclerosis, in: Nature, January 2019, no 566, pp. 538–542. [ DOI : 10.1038/s41586-018-0842-3 ]

Conferences without Proceedings

M. Andrade-Restrepo, P. Lemarre, L. Pujo-Menjouet, L. Tine, S. I. Ciuperca.
Modeling the spatial propagation of Aβ oligomers in alzheimer's disease, in: CEMRACS 2018 - Numerical and mathematical modeling for biological and medical applications: deterministic, probabilistic and statistical descriptions, Marseille, France, 2019, pp. 1 - 10.

Scientific Books (or Scientific Book chapters)

M. Caléro, I. S. Ciuperca, L. Pujo-Menjouet, L. Matar Tine.
Alzheimer Disease: Convergence Result from a Discrete Model Towardsa Continuous One, in: Trends in Biomathematics: Mathematical Modeling for Health, Harvesting, and Population Dynamics, Springer, 2019, pp. 397-431. [ DOI : 10.1007/978-3-030-23433-1_25 ]
K. Grzesik, K. Eng, F. Crauste, S. Battaglia.
In Silico Methods for Studying T Cell Biology, in: Int. Rev. Cell. Mol. Biol. 342, Elsevier, 2019, pp. 265-304. [ DOI : 10.1016/bs.ircmb.2018.07.005 ]
L. Pujo-Menjouet.
Le jeu de l'amour sans le hasard Mathématiques du couple, Des Equateurs, May 2019, pp. 1-248.
L. Pujo-Menjouet.
Passer notre amour à la machine, in: Futures of Love, August 2019.

Scientific Popularization

L. Pujo-Menjouet.
Est-ce par hasard s'il a le cœur qui s'égare, in: Pour la science, November 2019.

Other Publications

C. Rocabert, G. Beslon, C. Knibbe, S. Bernard.
Phenotypic Noise and the Cost of Complexity, November 2019, EvoLyon 2019, Poster.
References in notes
A. Besse, G. D. Clapp, S. Bernard, F. E. Nicolini, D. Levy, T. Lepoutre.
Stability Analysis of a Model of Interaction Between the Immune System and Cancer Cells in Chronic Myelogenous Leukemia, in: Bulletin of Mathematical Biology, 2017, pp. 1–27. [ DOI : 10.1007/s11538-017-0272-7 ]
A. Besse, T. Lepoutre, S. Bernard.
Long-term treatment effects in chronic myeloid leukemia, in: Journal of Mathematical Biology, 2017, pp. 1-26. [ DOI : 10.1007/s00285-017-1098-5 ]
G. D. Clapp, T. Lepoutre, R. El Cheikh, S. Bernard, J. Ruby, H. Labussière-Wallet, F. E. Nicolini, D. Levy.
Implication of the Autologous Immune System in BCR-ABL Transcript Variations in Chronic Myelogenous Leukemia Patients Treated with Imatinib., in: Cancer Research, October 2015, vol. 75, no 19, pp. 4053-62. [ DOI : 10.1158/0008-5472.CAN-15-0611 ]
F. Crauste, J. Mafille, L. Boucinha, S. Djebali, O. Gandrillon, J. Marvel, C. Arpin.
Identification of Nascent Memory CD8 T Cells and Modeling of Their Ontogeny, in: Cell Systems, February 2017, vol. 4, no 3, pp. 306-317. [ DOI : 10.1016/j.cels.2017.01.014 ]
U. Herbach, A. Bonnaffoux, T. Espinasse, O. Gandrillon.
Inferring gene regulatory networks from single-cell data: a mechanistic approach, in: BMC Systems Biology, November 2017, vol. 11, no 1, 105 p. [ DOI : 10.1186/s12918-017-0487-0 ]