Team, Visitors, External Collaborators
Overall Objectives
Research Program
Application Domains
Highlights of the Year
New Software and Platforms
New Results
Partnerships and Cooperations
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Section: New Software and Platforms


Databases of nucleic acids fragments bound to proteins

Keywords: Structural Biology - Nucleic Acids - Data base

Functional Description: NAfragDB is a python-based software for (i) the automated parsing, correction and annotation of all protein - nucleic acid structures in the public Protein Data Bank, (ii) the creation of libraries of non-redundant RNA/DNA structural fragments, (iii) the selection of sets of structures by customized queries, and (iv) the computation of statistics on sets of RNA/DNA - protein structures.