Team, Visitors, External Collaborators
Overall Objectives
Research Program
Application Domains
Highlights of the Year
New Software and Platforms
New Results
Bilateral Contracts and Grants with Industry
Partnerships and Cooperations
Dissemination
Bibliography
XML PDF e-pub
PDF e-Pub


Bibliography

Major publications by the team in recent years
[1]
N. Bajeux, F. Grognard, L. Mailleret.
Augmentative biocontrol when natural enemies are subject to Allee effects, in: Journal of Mathematical Biology, 2017, vol. 74, no 7, pp. 1561 - 1587. [ DOI : 10.1007/s00285-016-1063-8 ]
https://hal.archives-ouvertes.fr/hal-01402250
[2]
C. Baroukh, R. Muñoz-Tamayo, J.-P. Steyer, O. Bernard.
DRUM: A New Framework for Metabolic Modeling under Non-Balanced Growth. Application to the Carbon Metabolism of Unicellular Microalgae, in: PLoS ONE, August 2014, vol. 9, no 8, e104499. [ DOI : 10.1371/journal.pone.0104499 ]
https://hal.inria.fr/hal-01097327
[3]
O. Bernard.
Hurdles and challenges for modelling and control of microalgae for CO2 mitigation and biofuel production, in: Journal of Process Control, 2011, vol. 21, no 10, pp. 1378–1389. [ DOI : 10.1016/j.jprocont.2011.07.012 ]
http://hal.inria.fr/hal-00848385
[4]
V. Calcagno, F. Grognard, F. M. Hamelin, E. Wajnberg, L. Mailleret.
The functional response predicts the effect of resource distribution on the optimal movement rate of consumers, in: Ecology Letters, December 2014, vol. 17, no 12, pp. 1570-1579. [ DOI : 10.1111/ele.12379 ]
https://hal.inria.fr/hal-01084299
[5]
N. Giordano, F. Mairet, J.-L. Gouzé, J. Geiselmann, H. De Jong.
Dynamical allocation of cellular resources as an optimal control problem: Novel insights into microbial growth strategies, in: PLoS Computational Biology, March 2016, vol. 12, no 3, e1004802. [ DOI : 10.1371/journal.pcbi.1004802 ]
https://hal.inria.fr/hal-01332394
[6]
N. Go, C. Bidot, C. Belloc, S. Touzeau.
Integrative Model of the Immune Response to a Pulmonary Macrophage Infection: What Determines the Infection Duration?, in: PLoS ONE, September 2014, vol. 9, no 9, e107818. [ DOI : 10.1371/journal.pone.0107818 ]
https://hal.inria.fr/hal-01099937
[7]
F. Mairet, O. Bernard, P. Masci, T. Lacour, A. Sciandra.
Modelling neutral lipid production by the microalga Isochrysis affinis galbana under nitrogen limitation, in: Biores. Technol., 2011, vol. 102, pp. 142-149.
http://dx.doi.org/10.1016/j.biortech.2010.06.138
[8]
M. Moisan, O. Bernard, J.-L. Gouzé.
Near optimal interval observers bundle for uncertain bioreactors, in: Automatica, January 2009, vol. 45, no 1, pp. 291–295. [ DOI : 10.1016/j.automatica.2008.07.006 ]
https://hal.archives-ouvertes.fr/hal-01109396
[9]
C. Poignard, M. Chaves, J.-L. Gouzé.
Periodic Oscillations for Non Monotonic Smooth Negative Feedback Circuits, in: SIAM Journal on Applied Dynamical Systems, 2016, vol. 15, no 1, pp. 257–286. [ DOI : 10.1137/15M1033368 ]
https://hal.archives-ouvertes.fr/hal-01242157
[10]
L. Tournier, M. Chaves.
Interconnection of asynchronous Boolean networks, asymptotic and transient dynamics, in: Automatica, 2013, vol. 49, no 4, pp. 884-893. [ DOI : 10.1016/j.automatica.2013.01.015, ]
http://hal.inria.fr/hal-00848450
Publications of the year

Doctoral Dissertations and Habilitation Theses

[11]
L. G. Pereira.
Modeling cell response heterogeneity to pro-apoptotic ligands, Université Côte d'Azur, November 2019.
[12]
C. M. von Dossow.
Modélisation, analyse et contrôle de la croissance microalgale en cultures à haute densité, Sorbonne Université, May 2019.

Articles in International Peer-Reviewed Journals

[13]
s. Almeida, M. Chaves, F. Delaunay.
Transcription-based circadian mechanism controls the duration of molecular clock states in response to signaling inputs, in: Journal of Theoretical Biology, January 2020, vol. 484, 110015 p. [ DOI : 10.1016/j.jtbi.2019.110015 ]
https://hal.archives-ouvertes.fr/hal-02299359
[14]
N. Bajeux, F. Grognard, L. Mailleret.
Influence of the components of propagule pressure, Allee effects, and stochasticity on the time to establish introduced populations, in: Journal of Theoretical Biology, June 2019, vol. 471, pp. 91-107. [ DOI : 10.1016/j.jtbi.2019.03.012 ]
https://hal.inria.fr/hal-02139554
[15]
V. Baldazzi, P. Valsesia, M. Génard, N. Bertin.
Organ-wide and ploidy-dependent regulation both contribute to cell-size determination: evidence from a computational model of tomato fruit, in: Journal of Experimental Botany, November 2019, vol. 70, no 21, pp. 6215-6228. [ DOI : 10.1093/jxb/erz398 ]
https://hal.inria.fr/hal-02407512
[16]
C. Bresch, L. Carlesso, R. Suay, L. Van Oudenhove, S. Touzeau, H. Fatnassi, L. Ottenwaelder, B. Paris, C. Poncet, L. Mailleret, G. J. Messelink, P. Parolin.
In search of artificial domatia for predatory mites, in: Biocontrol Science and Technology, February 2019, vol. 29, no 2. [ DOI : 10.1080/09583157.2018.1540030 ]
https://hal.inria.fr/hal-01947693
[17]
V. Calcagno, F. M. Hamelin, L. Mailleret, F. Grognard.
How optimal foragers should respond to habitat changes: on the consequences of habitat conversion, in: Theoretical Ecology, August 2019. [ DOI : 10.1007/s12080-019-00437-7 ]
https://hal.inria.fr/hal-02392973
[18]
L. Chambon, I. Belgacem, J.-L. Gouzé.
Qualitative control of undesired oscillations in a genetic negative feedback loop with uncertain measurements, in: Automatica, 2019, vol. 112, 108642 p, forthcoming. [ DOI : 10.1016/j.automatica.2019.108642 ]
https://hal.inria.fr/hal-02418421
[19]
M. Chaves, D. A. Oyarzun.
Dynamics of complex feedback architectures in metabolic pathways, in: Automatica, January 2019, vol. 99, pp. 323 - 332. [ DOI : 10.1016/j.automatica.2018.10.046 ]
https://hal.archives-ouvertes.fr/hal-01936242
[20]
M. Chaves, D. A. Oyarzun, J.-L. Gouzé.
Analysis of a genetic-metabolic oscillator with piecewise linear models, in: Journal of Theoretical Biology, February 2019, vol. 462, pp. 259 - 269. [ DOI : 10.1016/j.jtbi.2018.10.026 ]
https://hal.archives-ouvertes.fr/hal-01936225
[21]
R. De-Luca, F. Bezzo, Q. Béchet, O. Bernard.
Meteorological Data-Based Optimal Control Strategy for Microalgae Cultivation in Open Pond Systems, in: Complexity, January 2019, vol. 2019, pp. 1-12. [ DOI : 10.1155/2019/4363895 ]
https://hal.inria.fr/hal-02427401
[22]
D. Demory, A.-C. Baudoux, A. Monier, N. Simon, C. Six, P. Ge, F. Rigaut-Jalabert, D. Marie, A. Sciandra, O. Bernard, S. Rabouille.
Picoeukaryotes of the Micromonas genus: sentinels of a warming ocean, in: The ISME journal, January 2019, vol. 13, no 1, pp. 132-146. [ DOI : 10.1038/s41396-018-0248-0 ]
https://hal.sorbonne-universite.fr/hal-01973977
[23]
A. Fanesi, A. Paule, O. Bernard, R. Briandet, F. Lopes.
The architecture of monospecific microalgae biofilms 2, in: Microorganisms, 2019, vol. 7, no 9, 352 p. [ DOI : 10.3390/microorganisms7090352 ]
https://hal.inria.fr/hal-02422042
[24]
N. Go, C. Belloc, C. Bidot, S. Touzeau.
Why, when and how should exposure be considered at the within-host scale? A modelling contribution to PRRSv infection, in: Mathematical Medicine and Biology, 2019, vol. 36, no 2, pp. 179-206. [ DOI : 10.1093/imammb/dqy005 ]
https://hal.inria.fr/hal-01947667
[25]
N. Go, S. Touzeau, Z. Islam, C. Belloc, A. Doeschl-Wilson.
How to prevent viremia rebound? Evidence from a PRRSv data-supported model of immune response, in: BMC Systems Biology, January 2019, vol. 13, 15 p. [ DOI : 10.1186/s12918-018-0666-7 ]
https://hal.inria.fr/hal-01999499
[26]
J. Grenier, H. Bonnefond, F. Lopes, O. Bernard.
The impact of light supply to photosynthetic moving biofilms, in: Algal Research - Biomass, Biofuels and Bioproducts, December 2019, vol. 44, no 101674. [ DOI : 10.1016/j.algal.2019.101674 ]
https://hal.archives-ouvertes.fr/hal-02292367
[27]
G. Koch, G. Rolland, M. Dauzat, A. Bediée, V. Baldazzi, N. Bertin, Y. Guédon, C. Granier.
Leaf Production and Expansion: A Generalized Response to Drought Stresses from Cells to Whole Leaf Biomass—A Case Study in the Tomato Compound Leaf, in: Plants, October 2019, vol. 8, no 10, 409 p. [ DOI : 10.3390/plants8100409 ]
https://hal.inria.fr/hal-02407529
[28]
P.-O. Lamare, N. Aguillon, J. Sainte-Marie, J. Grenier, H. Bonnefond, O. Bernard.
Gradient-based optimization of a rotating algal biofilm process, in: Automatica, July 2019, vol. 105, pp. 80-88. [ DOI : 10.1016/j.automatica.2019.02.043 ]
https://hal.inria.fr/hal-02422853
[29]
J. J. Lamb, O. Bernard, S. Sarker, K. M. Lien, D. R. Hjelme.
Perspectives of optical colourimetric sensors for anaerobic digestion, in: Renewable and Sustainable Energy Reviews, September 2019, vol. 111, pp. 87-96. [ DOI : 10.1016/j.rser.2019.04.083 ]
https://hal.inria.fr/hal-02421946
[30]
J. J. Lamb, O. Bernard, S. Sarker, K. M. Lien, D. Roar Hjelme.
Perspectives of surface plasmonic resonance optical fibre sensors for anaerobic digestion, in: Engineering in Life Sciences, November 2019, vol. 19, no 11, pp. 759-769. [ DOI : 10.1002/elsc.201900063 ]
https://hal.inria.fr/hal-02421874
[31]
F. Mairet, O. Bernard.
Twelve quick tips for designing sound dynamical models for bioprocesses, in: PLoS Computational Biology, August 2019, vol. 15, no 8, e1007222. [ DOI : 10.1371/journal.pcbi.1007222 ]
https://hal.inria.fr/hal-02421763
[32]
C. Martínez, F. Mairet, L. Meier, D. Jeison, A. Avila.
Modeling and analysis of an Absorption Column Connected to a Microalgae Culture, in: SIAM Journal on Applied Mathematics, 2020, forthcoming.
https://hal.archives-ouvertes.fr/hal-02432325
[33]
L. Mignerot, C. Nagasato, A. F. Peters, M.-M. Perrineau, D. Scornet, F. Pontheaux, W. Djema, Y. Badis, T. Motomura, C. Susana M., J. M. Cock.
Unusual Patterns of Mitochondrial Inheritance in the Brown Alga Ectocarpus, in: Molecular Biology and Evolution, 2019, forthcoming. [ DOI : 10.1093/molbev/msz186 ]
https://hal.archives-ouvertes.fr/hal-02269449
[34]
M. Morales, A. Hélias, O. Bernard.
Optimal integration of microalgae production with photovoltaic panels: environmental impacts and energy balance, in: Biotechnology for Biofuels, December 2019, vol. 12, no 1. [ DOI : 10.1186/s13068-019-1579-4 ]
https://hal.inria.fr/hal-02421845
[35]
T. Morel-Journel, C. Rais Assa, L. Mailleret, E. Vercken.
Its all about connections: hubs and invasion in habitat networks, in: Ecology Letters, February 2019. [ DOI : 10.1111/ele.13192 ]
https://hal.inria.fr/hal-01957100
[36]
E. Rousseau, M. Bonneault, F. Fabre, B. Moury, L. Mailleret, F. Grognard.
Virus epidemics, plant-controlled population bottlenecks and the durability of plant resistance, in: Philosophical Transactions of the Royal Society B: Biological Sciences, June 2019, vol. 374, no 1775. [ DOI : 10.1098/rstb.2018.0263 ]
https://hal.inria.fr/hal-02149025
[37]
J.-A. Sepulchre, S. Reverchon, J.-L. Gouzé, W. Nasser.
Modeling the bioconversion of polysaccharides in a continuous reactor: A case study of the production of oligo-galacturonates by Dickeya dadantii, in: Journal of Biological Chemistry, February 2019, vol. 294, no 5, pp. 1753-1762. [ DOI : 10.1074/jbc.RA118.004615 ]
https://hal.inria.fr/hal-01952846
[38]
B. D. Shoener, S. M. Schramm, F. Béline, O. Bernard, C. Martínez, B. G. Plosz, S. Snowling, J.-P. Steyer, B. Valverde-Pérez, D. Wagner, J. S. Guest.
Microalgae and cyanobacteria modeling in water resource recovery facilities: A critical review, in: Water Research X, 2019, 18 p. [ DOI : 10.1016/j.wroa.2018.100024 ]
https://hal.archives-ouvertes.fr/hal-02268495
[39]
I. Yegorov, F. Grognard, L. Mailleret, F. Halkett, P. Bernhard.
A dynamic game approach to uninvadable strategies for biotrophic pathogens, in: Dynamic Games and Applications, March 2019. [ DOI : 10.1007/s13235-019-00307-1 ]
https://hal.inria.fr/hal-02147836
[40]
I. Yegorov, F. Mairet, H. De Jong, J.-L. Gouzé.
Optimal control of bacterial growth for the maximization of metabolite production, in: Journal of Mathematical Biology, 2019, vol. 78, no 4, pp. 985–1032. [ DOI : 10.1007/s00285-018-1299-6 ]
https://hal.inria.fr/hal-01929475

Invited Conferences

[41]
L. Mailleret.
Pulsed perturbations in population dynamics, in: Modelife days - Journées de Modélisation, physique et mathématique du vivant, Mandelieu, France, November 2019.
https://hal.inria.fr/hal-02393308
[42]
L. Mailleret, S. Nilusmas, S. Touzeau, V. Calcagno, C. Djian-Caporalino, P. Castagnone-Sereno.
A demo-genetic model of root-knot nematod dynamics with applications to the deployment of plant resistance, in: Journée MODECO - Modélisation des Dynamiques Ecologiques, Nice, France, July 2019.
https://hal.inria.fr/hal-02393318
[43]
S. Touzeau.
Modélisation et contrôle en épidémiologie de cultures tropicales : application aux nématodes phytoparasites du bananier plantain et aux scolytes du caféier, in: AgriNumA'2019 - Symposium Agriculture Numérique en Afrique, Dakar, Senegal, April 2019.
https://hal.inria.fr/hal-02364583

International Conferences with Proceedings

[44]
S. Almeida, M. Chaves, F. Delaunay.
Period Control of the Coupled Clock and Cell Cycle Systems, in: 10th International Conference on Computational Systems-Biology and Bioinformatics, Nice, France, 2019.
https://hal.archives-ouvertes.fr/hal-02386398
[45]
O. Bara, H. Bonnefond, O. Bernard.
Model Development and Light Effect on a Rotating Algal Biofilm, in: DYCOPS 2019 - 12th IFAC Symposium on Dynamics and Control of Process Systems, including Biosystems, Florianópolis - SC, Brazil, April 2019.
https://hal.inria.fr/hal-01891661
[46]
Best Paper
L. Chambon, J.-L. Gouzé.
A new qualitative control strategy for the genetic Toggle Switch, in: DYCOPS 2019 - 12th IFAC Symposium on Dynamics and Control of Process Systems, including Biosystems, Florianopolis, Brazil, B. Chachuat, O. Bernard, J. E. Normey-Rico (editors), IFAC-PapersOnLine, Ifac, 2019, vol. 52, no 1, pp. 532-537. [ DOI : 10.1016/j.ifacol.2019.06.117 ]
https://hal.inria.fr/hal-02319873
[47]
L. Chambon, J.-L. Gouzé.
Global asymptotic stability of a genetic negative feedback loop with an affine control, in: CDC 2019 - 58th IEEE Conference on Decision and Control, Nice, France, December 2019.
https://hal.inria.fr/hal-02418431
[48]
L. Chambon, J.-L. Gouzé.
Global stabilization of a genetic positive feedback loop via the design of a synthetic auto-repression, in: FOSBE2019 - 8th IFAC Conference on Foundations of Systems Biology in Engineering, Valencia, Spain, October 2019.
https://hal.inria.fr/hal-02418438
[49]
M. Chaves, L. Scardovi, E. Firippi.
Coupling and synchronization of piecewise linear genetic regulatory systems, in: 58th IEEE Conference on Decision and Control, Nice, France, December 2019.
https://hal.archives-ouvertes.fr/hal-02386348
[50]
E. Cinquemani, F. Mairet, I. Yegorov, H. De Jong, J.-L. Gouzé.
Optimal control of bacterial growth for metabolite production: The role of timing and costs of control, in: ECC 2019 - 18th European Control Conference, Naples, Italy, IEEE, June 2019, pp. 2657-2662. [ DOI : 10.23919/ECC.2019.8796079 ]
https://hal.inria.fr/hal-02384034
[51]
W. Djema, O. Bernard, L. Giraldi.
Turnpike Features in Optimal Selection of Microalgae, in: 8 th IFAC Conference on Foundations of Systems Biology in Engineering (FOSBE 2019 - IFAC), Valencia, Spain, October 2019.
https://hal.inria.fr/hal-02422868
[52]
W. Djema, L. Giraldi, O. Bernard.
An Optimal Control Strategy Separating Two Species of Microalgae in Photobioreactors, in: DYCOPS 2019 - 12th IFAC Symposium on Dynamics and Control of Process Systems, including Biosystems, Florianopolis, Brazil, April 2019.
https://hal.inria.fr/hal-01891910
[53]
A. Dos Reis De Souza, D. Efimov, A. Polyakov, J.-L. Gouzé.
Robust Control of a Competitive Environment in the Chemostat using Discontinuous Control Laws, in: CDC 2019 - 58th IEEE Conference on Decision and Control, Nice, France, December 2019.
https://hal.inria.fr/hal-02308076
[54]
A. Dos Reis De Souza, J.-L. Gouzé, A. Polyakov, D. Efimov.
On Adaptive Estimation of Bacterial Growth in the Competitive Chemostat, in: 11th IFAC Nonlinear Control Systems (NOLCOS), Vienne, Austria, September 2019.
https://hal.inria.fr/hal-02416265
[55]
D. Figueiredo, E. Rocha, M. A. Martins, M. Chaves.
rPrism -A software for reactive weighted state transition models, in: 6th International Workshop, Hybrid Systems Biology, Prague, Czech Republic, 2019, pp. 165 - 174.
https://hal.archives-ouvertes.fr/hal-02386381
[56]
E. Firippi, M. Chaves.
Period -control in a coupled system of two genetic oscillators for synthetic biology, in: 8th IFAC Conference on Foundations of Systems Biology in Engineering, Valencia, Spain, 2019.
https://hal.archives-ouvertes.fr/hal-02386364
[57]
A. G. Yabo, J.-B. Caillau, J.-L. Gouzé.
Singular regimes for the maximization of metabolite production, in: CDC 2019 - 58th IEEE Conference on Decision and Control, Nice, France, December 2019.
https://hal.inria.fr/hal-02418444

Conferences without Proceedings

[58]
H. Bonnefond, Y. Lie, E. Pruvost, A. Talec, O. Bernard, A. Sciandra.
Improvement of microalgae strains by dynamic darwinian selection pressure, in: Alg'in Provence - European Workshop, Arles, France, October 2019.
https://hal.archives-ouvertes.fr/hal-02368717
[59]
C. Djuikem, F. Grognard, S. Touzeau, S. Bowong.
Modelling and controlling fungus Hemileia vastatrix, a coffee pest, in: BIOMATH 2019 - International Conference on Mathematical Methods and Models in Biosciences - Biomath 2019, Bedlewo, Poland, June 2019.
https://hal.inria.fr/hal-02309454
[60]
Y. Fotso Fotso, F. Grognard, S. Touzeau, B. Tsanou, S. Bowong.
Optimal control on a simple model of coffee berry borer infestation, in: BIOMATH 2019 - International Conference on Mathematical Methods and Models in Biosciences, Bedlewo, Poland, June 2019.
https://hal.inria.fr/hal-02309445
[61]
F. Grognard, P. Clin, F. Val, F. M. Hamelin.
Taking advantage of pathogen diversity and plant immunity to minimize disease prevalence, in: CMPD5 - Computational and Mathematical Population Dynamics, Fort Lauderdale, United States, May 2019.
https://hal.inria.fr/hal-02139538
[62]
F. Grognard, I. Tankam Chedjou, Y. Fotso Fotso, S. Touzeau.
Modelling, control, and optimization for tropical agriculture, in: CMPD5 - Computational and Mathematical Population Dynamics, Fort Lauderdale, United States, May 2019.
https://hal.inria.fr/hal-02139546
[63]
F. Guihéneuf, A. Sciandra, O. Bernard, H. Bonnefond.
Recent advances in microalgal biotechnology with an emphasis on biofilm cultivation, in: EPC7 - 7th European Phycological Congress, Zagreb, Croatia, August 2019.
https://hal.archives-ouvertes.fr/hal-02368789
[64]
H. Kanso, B. Quilot-Turion, M.-M. Memah, O. Bernard, J.-L. Gouzé, V. Baldazzi.
A reduction strategy to simplify a model of sugar metabolism for application to a large panel of genotypes, in: 8th Conference on Foundations of Systems Biology in Engineering -FOSBE19, Valencia, Spain, IFAC, October 2019.
https://hal.archives-ouvertes.fr/hal-02419377
[65]
C. Martínez, F. Mairet, L. Plaza, A. Sciandra, O. Bernard.
Quantifying the potential of microalgae culture systems to remove nutrients from wastewater, in: FOSBE 2019 - 8th IFAC Conference on Foundations of Systems Biology in Engineering, València, Spain, October 2019.
https://hal.archives-ouvertes.fr/hal-02368853
[66]
S. Nilusmas, S. Touzeau, V. Calcagno, C. Djian-Caporalino, P. Castagnone-Sereno, L. Mailleret.
A demo-genetic model of root-knot nematod dynamics with applications to the deployment of plant resistance, in: CMPD5 - Computational and Mathematical Population Dynamics, Fort Lauderdale, United States, May 2019.
https://hal.inria.fr/hal-02365103
[67]
I. Tankam Chedjou, S. Touzeau, L. Mailleret, F. Grognard, J. J. Tewa.
Agricultural control of Radopholus similis in banana and plantain plantations, in: BIOMATH 2019 - International Conference on Mathematical Methods and Models in Biosciences, Bedlewo, Poland, June 2019.
https://hal.inria.fr/hal-02139560
[68]
A. G. Yabo, J.-B. Caillau, J.-L. Gouzé.
Bacterial growth strategies as Optimal Control problems: maximizing metabolite production, in: FGS'2019 19th French-German-Swiss conference on Optimization, Nice, France, September 2019.
https://hal.archives-ouvertes.fr/hal-02421164

Scientific Books (or Scientific Book chapters)

[69]
H. Bonnefond, C. Combe, J.-P. Cadoret, A. Sciandra, O. Bernard.
Potentiel des microalgues, in: Chimie verte et industries agroalimentaires - Vers une bioéconomie durable, S. Baumberger (editor), Lavoisier, December 2019, forthcoming.
https://hal.inria.fr/hal-02421830

Books or Proceedings Editing

[70]
M. Chaves, M. A. Martins (editors)
Molecular Logic and Computational Synthetic BiologyFirst International Symposium, MLCSB 2018, Santiago, Chile, December 17–18, 2018, Revised Selected Papers, LNCS, Springer, 2019, vol. 11415. [ DOI : 10.1007/978-3-030-19432-1 ]
https://hal.archives-ouvertes.fr/hal-02386442

Internal Reports

[71]
P.-O. Lamare, N. Aguillon, J. Sainte-Marie, J. Grenier, H. Bonnefond, O. Bernard.
Gradient-based optimization of a rotating algal biofilm process, Inria - Sophia antipolis, January 2019, no RR-9250.
https://hal.inria.fr/hal-01990002

Patents

[72]
O. Bernard, H. Bonnefond, A. Sciandra, E. Pruvost, G. M. Grimaud.
Bioreactor for the selection of microalgae, September 2019, no 16/335,390, 2019.
https://hal.inria.fr/hal-02422029

Other Publications

[73]
W. Djema, O. Bernard, L. Giraldi.
Separating Two Species of Microalgae in Photobioreactors in Minimal Time, December 2019, working paper or preprint.
https://hal.inria.fr/hal-02423370
[74]
W. Djema, L. Giraldi, O. Bernard.
Turnpike Features in Optimal Selection ofMicroalgae, December 2019, working paper or preprint.
https://hal.inria.fr/hal-02423373
[75]
C. Martínez, F. Mairet, O. Bernard.
Dynamics of the periodically forced light-limited Droop model, December 2019, working paper or preprint.
https://hal.archives-ouvertes.fr/hal-02422838
[76]
S. Nilusmas, M. Mercat, T. Perrot, C. Djian-Caporalino, P. Castagnone-Sereno, S. Touzeau, V. Calcagno, L. Mailleret.
A multi-seasonal model of plant-nematode interactions and its use to identify optimal plant resistance deployment strategies, December 2019, working paper or preprint. [ DOI : 10.1101/774869 ]
https://hal.inria.fr/hal-02393028
References in notes
[77]
S. Almeida, M. Chaves, F. Delaunay, C. Feillet.
A comprehensive reduced model of the mammalian cell cycle, in: IFAC World Congress 2017, Toulouse, France, July 2017. [ DOI : 10.1016/j.ifacol.2017.08.2204 ]
https://hal.inria.fr/hal-01568507
[78]
M. Basan, M. Zhu, X. Dai, M. Warren, D. Sévin, Y. Wang, T. Hwa.
Inflating bacterial cells by increased protein synthesis, in: Mol. Syst. Biol., oct 2015, vol. 11, no 10, 836 p.
https://onlinelibrary.wiley.com/doi/abs/10.15252/msb.20156178
[79]
M. Caïa, O. Bernard, J.-P. Steyer.
Modelling an Artificial Microalgae-Cyanobacteria Ecosystem, in: IFAC-PapersOnLine, 2018, vol. 51, no 2, pp. 655 - 660. [ DOI : 10.1016/j.ifacol.2018.03.111 ]
https://hal.sorbonne-universite.fr/hal-01833296
[80]
E. Desnoues, M. Génard, B. Quilot-Turion, V. Baldazzi.
A kinetic model of sugar metabolism in peach fruit reveals a functional hypothesis of markedly low fructose-to-glucose ratio phenotype, in: Plant Journal, May 2018, vol. 94, no 4, pp. 685-698.
https://hal.inria.fr/hal-01953042
[81]
L. Etienne.
Combinaison de micro habitats artificiels et de ressources alimentaires pour des acariens agents de lutte biologique, Université de Montpellier & Montpellier SupAgroMaster Mention " Biodiversité, Ecologie, Evolution, B2E ", 2019.
[82]
N. Giordano, F. Mairet, J.-L. Gouzé, J. Geiselmann, H. De Jong.
Dynamical allocation of cellular resources as an optimal control problem: Novel insights into microbial growth strategies, in: PLoS Computational Biology, March 2016, vol. 12, no 3, e1004802. [ DOI : 10.1371/journal.pcbi.1004802 ]
https://hal.inria.fr/hal-01332394
[83]
J.-L. Gouzé, A. Rapaport, Z. Hadj-Sadok.
Interval observers for uncertain biological systems, in: Ecological modelling, 2000, vol. 133, pp. 45-56.
http://dx.doi.org/10.1016/S0304-3800(00)00279-9
[84]
L. Guitou.
Coupler l'allocation de ressources cellulaires á l'expansion de cellules végétales : analyse d'un modèle dynamique, Polytech Nice-Sophia, 2019.
[85]
M. Haond.
Impact de la capacité de charge de l’environnementsur les dynamiques d’expansions de métapopulations. Théories et applications à un système expérimental hôte-parasitoïde, Université Côte d'Azur, 2019.
[86]
M. Haond, T. Morel-Journel, E. Lombaert, E. Vercken, L. Mailleret, L. Roques.
When higher carrying capacities lead to faster propagation, in: Peer Community in Ecology, September 2018.
https://hal.inria.fr/hal-01883019
[87]
L. Lardon, A. Hélias, B. Sialve, J.-P. Steyer, O. Bernard.
Life-Cycle Assessment of Biodiesel Production from Microalgae, in: Environ. Sci. Technol., 2009, vol. 43, pp. 6475-6481.
[88]
B. Louis.
Modélisation individu-centrée pour optimiserl’introduction de populations et Applications en biologiede la conservation et lutte biologique, Université Côte d'Azur, Master 2 Ingénierie MathématiqueModélisation Stochastique et Statistique, 2019.
[89]
L. Mailleret, F. Grognard.
Global stability and optimisation of a general impulsive biological control model, in: Mathematical Biosciences, 2009, vol. 221, no 2, pp. 91-100.
http://dx.doi.org/10.1016/j.mbs.2009.07.002
[90]
C. Martínez, O. Bernard, F. Mairet.
Maximizing microalgae productivity in a light-limited chemostat, in: IFAC-PapersOnLine, 2018, vol. 51, no 2, pp. 735 - 740. [ DOI : 10.1016/j.ifacol.2018.04.001 ]
https://hal.inria.fr/hal-01891634
[91]
C. Martínez, F. Mairet, O. Bernard.
Theory of turbid microalgae cultures, in: Journal of Theoretical Biology, November 2018, vol. 456, pp. 190 - 200. [ DOI : 10.1016/j.jtbi.2018.07.016 ]
https://hal.inria.fr/hal-01891616
[92]
P. Masci, O. Bernard, F. Grognard.
Continuous Selection of the Fastest Growing Species in the Chemostat, in: Proceedings of the IFAC conference, Seoul, Korea, 2008.
[93]
M. Morales, P. Collet, L. Lardon, A. Hélias, J.-P. Steyer, O. Bernard.
Life-Cycle Assessment of Microalgal-Based Biofuels, in: Biomass, Biofuels and Biochemicals, Elsevier, 2018, pp. 507-550.
https://hal.inria.fr/hal-01956296
[94]
T. Morel Journel.
Stratégies d'introduction d'organismes dans une environment spatialement structuré, SVS, Université Nice Sophia Antipolis, 2015.
[95]
B. Polizzi, O. Bernard, M. Ribot.
A time-space model for the growth of microalgae biofilms for biofuel production, in: Journal of Theoretical Biology, August 2017. [ DOI : 10.1016/j.jtbi.2017.08.017 ]
https://hal.archives-ouvertes.fr/hal-01408045
[96]
B. Sialve, N. Bernet, O. Bernard.
Anaerobic digestion of microalgae as a necessary step to make microalgal biodiesel sustainable, in: Biotechnol. Advances, 2009, vol. 27, pp. 409-416.
[97]
V. Tapissier.
Optimisation d’un bioréacteur, Polytech Nice-Sophia, 2019.