Team, Visitors, External Collaborators
Overall Objectives
Research Program
Application Domains
Highlights of the Year
New Software and Platforms
New Results
Partnerships and Cooperations
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Publications of the year

Doctoral Dissertations and Habilitation Theses

A. Denizot.
Simulating calcium signaling in fine astrocytic processes, Université de Lyon, November 2019.

Articles in International Peer-Reviewed Journals

S. Danthine, C. Vors, D. Agopian, A. Durand, R. Guyon, F. Carrière, C. Knibbe, M. Létisse, M.-C. Michalski.
Homogeneous triacylglycerol tracers have an impact on the thermal and structural properties of dietary fat and its lipolysis rate under simulated physiological conditions, in: Chemistry and Physics of Lipids, December 2019, vol. 225, 104815 p. [ DOI : 10.1016/j.chemphyslip.2019.104815 ]
A. A. Davin, T. Tricou, E. Tannier, D. M. de Vienne, G. J. Szöllosi.
Zombi: A phylogenetic simulator of trees, genomes and sequences that accounts for dead lineages, in: Bioinformatics, 2019. [ DOI : 10.1093/bioinformatics/btz710 ]
A. Denizot, M. Arizono, V. U. Nägerl, H. Soula, H. Berry.
Simulation of calcium signaling in fine astrocytic processes: effect of spatial properties on spontaneous activity, in: PLoS Computational Biology, August 2019, vol. 15, no 8, e1006795, pp. 1-33. [ DOI : 10.1371/journal.pcbi.1006795 ]
G. Gangarossa, S. Perez, Y. Dembitskaya, I. Prokin, H. Berry, L. Venance.
BDNF controls bidirectional endocannabinoid-plasticity at corticostriatal synapses, in: Cerebral Cortex, April 2019, vol. bhz081, pp. 1-18. [ DOI : 10.1093/cercor/bhz081 ]
D. Hasic, E. Tannier.
Gene tree reconciliation including transfers with replacement is NP-hard and FPT, in: Journal of Combinatorial Optimization, 2019, vol. 38, no 2, pp. 502–544. [ DOI : 10.1007/s10878-019-00396-z ]
D. Hasic, E. Tannier.
Gene tree species tree reconciliation with gene conversion, in: Journal of Mathematical Biology, 2019, vol. 78, no 6, pp. 1981–2014, [ DOI : 10.1007/s00285-019-01331-w ]
C. Knibbe, G. Beslon, D. Misevic.
Introduction to the ECAL 2017 Special Issue, in: Artificial Life, November 2019, vol. 25, no 4, pp. 313-314. [ DOI : 10.1162/artl_a_00298 ]
N. Méger, C. Rigotti, C. Pothier, T. Nguyen, F. Lodge, L. Gueguen, R. Andréoli, M.-P. Doin, M. Datcu.
Ranking evolution maps for Satellite Image Time Series exploration: application to crustal deformation and environmental monitoring, in: Data Mining and Knowledge Discovery, January 2019, vol. 33, no 1, pp. 131-167. [ DOI : 10.1007/s10618-018-0591-9 ]
E. Parey, A. Crombach.
Evolution of the Drosophila melanogaster Chromatin Landscape and Its Associated Proteins, in: Genome Biology and Evolution, January 2019, vol. 11, no 3, pp. 660-677. [ DOI : 10.1093/gbe/evz019 ]
S. Peignier, C. Rigotti, G. Beslon.
Evolutionary Subspace Clustering Using Variable Genome Length, in: Computational Intelligence, 2020, pp. 1-39, forthcoming.
J. P. Rutten, P. Hogeweg, G. Beslon.
Adapting the engine to the fuel: mutator populations can reduce the mutational load by reorganizing their genome structure, in: BMC Evolutionary Biology, 2019, vol. 19, no 1, pp. 1-17. [ DOI : 10.1186/s12862-019-1507-z ]

International Conferences with Proceedings

Q. Carde, M. Foley, C. Knibbe, D. P. Parsons, J. Rouzaud-Cornabas, G. Beslon.
How to reduce a genome? ALife as a tool to teach the scientific method to school pupils, in: ALIFE 2019 - Conference on Artificial Life, Newcastle, United Kingdom, MIT Press, July 2019, pp. 497-504. [ DOI : 10.1162/isal_a_00211 ]
L. Foulon, S. Fenet, C. Rigotti, D. Jouvin.
Scoring Message Stream Anomalies in Railway Communication Systems, in: LMID 2019 - IEEE Workshop on Learning and Mining with Industrial Data, Beijing, China, November 2019, pp. 1-8.
T. Nguyen, N. Méger, C. Rigotti, C. Pothier, N. Gourmelen, E. Trouvé.
A pattern-based mining system for exploring Displacement Field Time Series, in: 19th IEEE International Conference on Data Mining (ICDM) Demo, Beijing, China, Proceedings of the IEEE International Conference on Data Mining (ICDM) Demo, IEEE, November 2019, pp. 1110-1113.

National Conferences with Proceedings

L. Foulon, C. Rigotti, S. Fenet, D. Jouvin.
Approximation du score CFOF de détection d’anomalie dans un arbre d’indexation iSAX : Application au contexte SI de la SNCF, in: EGC 2019 - 19ème Conférence francophone sur l'Extraction et la Gestion des Connaissances, Metz, France, 2019, pp. 1-12.

Scientific Books (or Scientific Book chapters)

M. De Pittà, H. Berry.
Computational Glioscience, Springer Series in Computational Neuroscience, Springer, 2019, pp. 1-505. [ DOI : 10.1007/978-3-030-00817-8 ]
M. De Pittà, E. Ben-Jacob, H. Berry.
G protein-coupled receptor-mediated calcium signaling in astrocytes, in: Computational Glioscience, M. De Pittà, H. Berry (editors), Springer Series in Computational Neuroscience, Springer, January 2019, pp. 115-150. [ DOI : 10.1007/978-3-030-00817-8_5 ]
M. De Pittà, H. Berry.
A Neuron-Glial Perspective for Computational Neuroscience, in: Computational Glioscience, M. De Pittà, H. Berry (editors), Springer Series in Computational Neuroscience, Spinger, January 2019, pp. 3-35. [ DOI : 10.1007/978-3-030-00817-8_1 ]
A. Denizot, H. Berry, S. Venugopal.
Intracellular Ca 2+ Dynamics in Astrocytes: Modeling the Underlying Spatiotemporal Diversity, in: Encyclopedia of Computational Neuroscience, 2019, pp. 1-19, forthcoming.
J. Lallouette, M. De Pittà, H. Berry.
Astrocyte networks and intercellular calcium propagation, in: Computational Glioscience, M. De Pittà, H. Berry (editors), Springer Series in Computational Neuroscience, January 2019, pp. 177-210. [ DOI : 10.1007/978-3-030-00817-8_7 ]
M. Stimberg, D. F. M. Goodman, R. Brette, M. De Pittà.
Modeling Neuron–Glia Interactions with the Brian 2 Simulator, in: Computational Glioscience, M. D. Pittà, H. Berry (editors), January 2019, pp. 471-505. [ DOI : 10.1007/978-3-030-00817-8_18 ]

Internal Reports

F. Berthoud, P. Guitton, L. Lefèvre, S. Quinton, A. Rousseau, J. Sainte-Marie, C. Serrano, J.-B. Stefani, P. Sturm, E. Tannier.
Sciences, Environnements et Sociétés : Rapport long du groupe de travail MakeSEnS d’Inria, Inria, October 2019.

Scientific Popularization

E. Tannier, B. Boussau, V. Daubin.
Quand les branches de l’arbre du vivant s’entremêlent, in: Pour la science, 2019.

Other Publications

L. Foulon, S. Fenet, C. Rigotti, D. Jouvin.
Detecting Anomalies over Message Streams in Railway Communication Systems, September 2019, 1 p, AALTD@ECML/PKDD 2019 - 4th Workshop on Advanced Analytics and Learning on Temporal Data. Poster, Poster.
C. Rocabert, G. Beslon, C. Knibbe, S. Bernard.
Phenotypic Noise and the Cost of Complexity, November 2019, EvoLyon 2019, Poster.
References in notes
P. Galison.
Image and Logic: A Material Culture of Microphysics, University Of Chicago Press, 1997.
C. Vors, G. Pineau, L. Gabert, al..
Modulating absorption and postprandial handling of dietary fatty acids by structuring fat in the meal: a randomized crossover clinical trial, in: Am J Clin Nutr, 2013, vol. 97, pp. 23–36.