Team, Visitors, External Collaborators
Overall Objectives
Research Program
Application Domains
Highlights of the Year
New Software and Platforms
New Results
Partnerships and Cooperations
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Major publications by the team in recent years
C. Bénar, T. Papadopoulo, B. Torrésani, M. Clerc.
Consensus Matching Pursuit for Multi-Trial EEG Signals, in: Journal of Neuroscience Methods, 2009, vol. 180, pp. 161–170. [ DOI : DOI: 10.1016/j.jneumeth.2009.03.005 ]
E. Caruyer, C. Lenglet, G. Sapiro, R. Deriche.
Design of multishell sampling schemes with uniform coverage in diffusion MRI, in: Magnetic Resonance in Medicine, June 2013, vol. 69, no 6, pp. 1534–1540. [ DOI : 10.1002/mrm.24736 ]
M. Descoteaux, E. Angelino, S. Fitzgibbons, R. Deriche.
Regularized, Fast, and Robust Analytical Q-Ball Imaging, in: Magnetic Resonance in Medicine, 2007, vol. 58, no 3, pp. 497–510.
M. Descoteaux, R. Deriche, T. R. Knosche, A. Anwander.
Deterministic and Probabilistic Tractography Based on Complex Fibre Orientation Distributions, in: IEEE Transactions in Medical Imaging, February 2009, vol. 28, no 2, pp. 269–286.
R. H. Fick, D. Wassermann, E. Caruyer, R. Deriche.
MAPL: Tissue microstructure estimation using Laplacian-regularized MAP-MRI and its application to HCP data, in: Neuroimage, July 2016, vol. 134, pp. 365–385. [ DOI : 10.1016/j.neuroimage.2016.03.046 ]
G. Girard, A. Daducci, L. Petit, J.-P. Thiran, K. Whittingstall, R. Deriche, D. Wassermann, M. Descoteaux.
AxTract: Toward microstructure informed tractography, in: Human Brain Mapping, November 2017, vol. 38, no 11, pp. 5485-5500.
S. Vallaghé, T. Papadopoulo.
A Trilinear Immersed Finite Element Method for Solving the Electroencephalography Forward Problem, in: SIAM Journal on Scientific Computing, 2010, vol. 32, no 4, pp. 2379–2394.
Publications of the year

Doctoral Dissertations and Habilitation Theses

K. Maksymenko.
Novel algorithmic approaches for the forward and inverse M/EEG problems, Université Côte d'Azur, December 2019.

Articles in International Peer-Reviewed Journals

S. Bhattacharyya, M. Clerc, M. Hayashibe.
Augmenting Motor Imagery Learning for Brain–Computer Interfacing Using Electrical Stimulation as Feedback, in: IEEE Transactions on Medical Robotics and Bionics, November 2019, vol. 1, no 4, pp. 247-255. [ DOI : 10.1109/TMRB.2019.2949854 ]
L. Chen, D. Wassermann, D. Abrams, J. Kochalka, G. Gallardo-Diez, V. Menon.
The visual word form area (VWFA) is part of both language and attention circuitry, in: Nature Communications, December 2019, vol. 10, no 1, Lang Chen, Demian Wassermann, and Daniel Abrams contributed equally. [ DOI : 10.1038/s41467-019-13634-z ]
S. Deslauriers-Gauthier, J.-M. Lina, R. Butler, K. Whittingstall, P.-M. Bernier, R. Deriche, M. Descoteaux.
White Matter Information Flow Mapping from Diffusion MRI and EEG, in: NeuroImage, July 2019. [ DOI : 10.1016/j.neuroimage.2019.116017 ]
R. H. Fick, D. Wassermann, R. Deriche.
The Dmipy Toolbox: Diffusion MRI Multi-Compartment Modeling and Microstructure Recovery Made Easy, in: Frontiers in Neuroinformatics, October 2019, vol. 13. [ DOI : 10.3389/fninf.2019.00064 ]
P. Filipiak, R. H. Fick, A. Petiet, M. Santin, A.-C. Philippe, S. Lehéricy, P. Ciuciu, R. Deriche, D. Wassermann.
Reducing the number of samples in spatiotemporal dMRI acquisition design, in: Magnetic Resonance in Medicine, 2019. [ DOI : 10.1002/mrm.27601 ]
P. Görlach, E. Hubert, T. Papadopoulo.
Rational invariants of even ternary forms under the orthogonal group, in: Foundations of Computational Mathematics, 2019, vol. 19, pp. 1315-1361. [ DOI : 10.1007/s10208-018-9404-1 ]
K. Maksymenko, M. Clerc, T. Papadopoulo.
Fast Approximation of EEG Forward Problem and Application to Tissue Conductivity Estimation, in: IEEE Transactions on Medical Imaging, 2019,, forthcoming. [ DOI : 10.1109/TMI.2019.2936921 ]
L. J. O'Donnell, A. Daducci, D. Wassermann, C. Lenglet.
Advances in computational and statistical diffusion MRI, in: NMR in Biomedicine, 2019, vol. 32, no 4, e3805. [ DOI : 10.1002/nbm.3805 ]
M. Pizzolato, G. Gilbert, J.-P. Thiran, M. Descoteaux, R. Deriche.
Adaptive phase correction of diffusion-weighted images, in: NeuroImage, October 2019, 116274 p. [ DOI : 10.1016/j.neuroimage.2019.116274 ]
S. Rimbert, N. Gayraud, L. Bougrain, M. Clerc, S. Fleck.
Can a Subjective Questionnaire Be Used as Brain-Computer Interface Performance Predictor?, in: Frontiers in Human Neuroscience, January 2019, vol. 12, 11 p. [ DOI : 10.3389/fnhum.2018.00529 ]
S. Rimbert, P. Riff, N. Gayraud, D. Schmartz, L. Bougrain.
Median Nerve Stimulation Based BCI: A New Approach to Detect Intraoperative Awareness During General Anesthesia, in: Frontiers in Neuroscience, June 2019, vol. 13, 13 p. [ DOI : 10.3389/fnins.2019.00622 ]
M. Zucchelli, S. Deslauriers-Gauthier, R. Deriche.
A Computational Framework For Generating Rotation Invariant Features And Its Application In Diffusion MRI, in: Medical Image Analysis, February 2020. [ DOI : 10.1016/ ]

International Conferences with Proceedings

A. Alimi, S. Deslauriers-Gauthier, R. Deriche.
Towards validation of diffusion MRI tractography: bridging the resolution gap with 3D Polarized Light Imaging, in: ISMRM 2019 - 27th Annual Meeting of International Society for Magnetic Resonance in Medicine, Montréal, Canada, May 2019.
A. Alimi, S. Deslauriers-Gauthier, F. Matuschke, D. Schmitz, M. Axer, R. Deriche.
Analytical Fiber ODF Reconstruction in 3D Polarized Light Imaging: Performance Assessment, in: ISBI 2019 - IEEE International Symposium on Biomedical Imaging, Venice, Italy, 2019.
S. Deslauriers-Gauthier, R. Deriche.
Estimation of Axon Conduction Delay, Conduction Speed, and Diameter from Information Flow using Diffusion MRI and MEG, in: ISMRM 2019 - 27th Annual Meeting of International Society for Magnetic Resonance in Medicine, Montreal, Canada, May 2019, Data were provided by the Human Connectome Project (HCP), WU-MinnConsortium (Principal Investigators: David Van Essen and Kamil Ugurbil;1U54MH091657) funded by the 16 NIH Institutes and Centers that supportthe NIH Blueprint for Neuroscience Research; and by the McDonnell Center forSystems Neuroscience at Washington University.
S. Deslauriers-Gauthier, R. Deriche.
Estimation of Axonal Conduction Speed and the Inter Hemispheric Transfer Time using Connectivity Informed Maximum Entropy on the Mean, in: SPIE Medical Imaging 2019, San Diego, United States, February 2019.
P. Filipiak, R. H. Fick, A. Petiet, M. Santin, A.-C. Philippe, S. Lehéricy, R. Deriche, D. Wassermann.
Coarse-Grained Spatiotemporal Acquisition Design for Diffusion MRI, in: ISBI 2019 - IEEE International Symposium on Biomedical Imaging, Venice, Italy, April 2019.
S. Rimbert, P. Guerci, N. Gayraud, C. Meistelman, L. Bougrain.
Innovative Brain-Computer Interface based on motor cortex activity to detect accidental awareness during general anesthesia, in: IEEE SMC 2019 - IEEE International Conference on Systems, Man, and Cybernetics, Bari, Italy, October 2019.

Conferences without Proceedings

I. Costantini, S. Deslauriers-Gauthier, R. Deriche.
Deconvolution of fMRI Data using a Paradigm Free Iterative Approach based on Partial Differential Equations, in: OHBM 2019 - Organization for Human Brain Mapping Annual Meeting, Rome, Italy, June 2019.
I. Costantini, S. Deslauriers-Gauthier, R. Deriche.
Novel 4-D Algorithm for Functional MRI Image Regularization using Partial Differential Equations, in: ISMRM 2019 - 27th Annual Meeting of International Society for Magnetic Resonance in Medicine, Montréal, Canada, May 2019.
M. Frigo, S. Deslauriers-Gauthier, D. Parker​, A. A. Ould Ismail, J. J. Kim, R. Verma, R. Deriche.
Effects of tractography filtering on the topology and interpretability of connectomes, in: OHBM 2019 - Organization for Human Brain Mapping, Roma, Italy, June 2019.
M. Pizzolato, R. Deriche, E. J. Canales-Rodriguez, J.-P. Thiran.
Spatially Varying Monte Carlo Sure for the Regularization of Biomedical Images, in: ISBI 2019 - IEEE 16th International Symposium on Biomedical Imaging, Venice, Italy, IEEE, April 2019, pp. 1639-1642. [ DOI : 10.1109/ISBI.2019.8759338 ]
M. Zucchelli, D. Parker​, S. Deslauriers-Gauthier, J. J. Kim, R. Verma​, R. Deriche.
A Novel Characterization of Traumatic Brain Injury in White Matter with Diffusion MRI Spherical-Harmonics Rotation Invariants, in: ISMRM 2019 - 27th Annual Meeting of International Society for Magnetic Resonance in Medicine, Montreal, Canada, May 2019.

Scientific Popularization

F. Turi, M. Clerc.
Adaptive parameter setting in a code modulated visual evoked potentials BCI, in: 8th Graz Brain-Computer Interface Conference 2019, Graz, Austria, September 2019.

Other Publications

J. Benerradi.
Measuring auditory attention with electroencephalography, Université de Lorraine ; Inria - Sophia Antipolis, September 2019, 57 p.
I. Kojčić, T. Papadopoulo, R. Deriche, S. Deslauriers-Gauthier.
Connectivity-informed solution for spatio-temporal M/EEG source reconstruction, July 2019, NeuroMod 2019 - First meeting of the NeuroMod Institute, Poster.
I. Kojčić, T. Papadopoulo, R. Deriche, S. Deslauriers-Gauthier.
Connectivity-informed spatio-temporal MEG source reconstruction: Simulation results using a MAR model, October 2019, Colloque Line Garnero, Poster.
F. Lotte, M. Clerc, A. Appriou, A. Audino, C. Benaroch, P. Giacalone, C. Jeunet, J. Mladenović, T. Monseigne, T. Papadopoulo, L. Pillette, A. Roc, K. Sadatnejad, F. Turi.
Inria Research & Development for the Cybathlon BCI series, September 2019, 8th Graz Brain-Computer Interface Conference 2019, Poster.
References in notes
H. Johansen-Berg, T. E. J. Behrens (editors)
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D. K. Jones (editor)
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AxCaliber: a method for measuring axon diameter distribution from diffusion MRI, in: Magnetic Resonance in Medicine, 2008, vol. 59, no 6, pp. 1347–54.
H.-E. Assemlal, J. Campbell, B. Pike, K. Siddiqi.
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Estimation and Processing of Ensemble Average Propagator and Its Features in Diffusion MRI, University of Nice Sophia Antipolis, May 2012.
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Optimal Real-Time Q-Ball Imaging Using Regularized Kalman Filtering with Incremental Orientation Sets, in: Medical Image Analysis, August 2009, vol. 13, no 4, pp. 564–579.
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Apparent Diffusion Coefficients from High Angular Resolution Diffusion Imaging: Estimation and Applications, in: Magnetic Resonance in Medicine, 2006, vol. 56, pp. 395–410.
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High Angular Resolution Diffusion MRI Segmentation Using Region-Based Statistical Surface Evolution, in: Journal of Mathematical Imaging and Vision, February 2009, vol. 33, no 2, pp. 239-252.
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Multiple q-shell diffusion propagator imaging, in: Medical Image Analysis, 2011, vol. 15, no 4, pp. 603–621. [ DOI : DOI: 10.1016/ ]
M. Descoteaux.
High Angular Resolution Diffusion MRI: From Local Estimation to Segmentation and Tractography, University of Nice Sophia Antipolis, February 2008.
Q. Dong, R. C. Welsh, T. L. Chenevert, R. C. Carlos, P. Maly-Sundgren, D. M. Gomez-Hassan, S. K. Mukherji.
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P. Durand, V. Auboiroux, V. Rohu, L. Langar, F. Berger, E. Labyt.
Glial tumor localization and characterization using DTI augmented MEG modelling, in: Proceedings of Biomag, Halifax, Canada, Biomag, 2014.
A. Ghosh, R. Deriche.
From Second to Higher Order Tensors in Diffusion-MRI, in: Tensors in Image Processing and Computer Vision, S. Aja-Fernández, R. de Luis García, D. Tao, X. Li (editors), Advances in Pattern Recognition, Springer London, May 2009, chap. 9, pp. 315-. [ DOI : 10.1007/978-1-84882-299-3 ]
A. Ghosh, R. Deriche.
From Diffusion MRI to Brain Connectomics, in: Modeling in Computational Biology and Medicine: A Multidisciplinary Endeavor, F. Cazals, P. Kornprobst (editors), Springer, 2013, chap. 6, pp. 193–231.
A. Ghosh.
High Order Models in Diffusion MRI and Applications, University of Nice Sophia Antipolis, April 2011.
A. Ghosh, T. Milne, R. Deriche.
Constrained Diffusion Kurtosis Imaging Using Ternary Quartics & MLE, in: Magnetic Resonance in Medicine, July 2013, Article first published online: 2 JUL 2013 - Volume 71, Issue 4, April 2014, Pages: 1581–1591. [ DOI : 10.1002/mrm.24781 ]
S. Hitziger, M. Clerc, S. Saillet, C. Bénar, T. Papadopoulo.
Adaptive Waveform Learning: A Framework for Modeling Variability in Neurophysiological Signals, in: IEEE Transactions on Signal Processing, April 2017, vol. 65, no 16, pp. 4324–4338.
J. Kybic, M. Clerc, T. Abboud, O. Faugeras, R. Keriven, T. Papadopoulo.
A Common Formalism for the Integral Formulations of the Forward EEG Problem, in: IEEE Transactions on Medical Imaging, January 2005, vol. 24, pp. 12–28.
D. Le Bihan, E. Breton.
Imagerie de Diffusion in vivo par Résonnance Magnétique Nucléaire, in: CR Académie des Sciences, 1985, no 301, pp. 1109-1112.
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Diffusion tensor imaging: concepts and applications, in: J Magn Reson Imaging., 2001, vol. 13, no 4, pp. 534-46.
C. Lenglet, J. S. W. Campbell, M. Descoteaux, G. Haro, P. Savadjiev, D. Wassermann, A. Anwander, R. Deriche, G. B. Pike, G. Sapiro, K. Siddiqi, P. Thompson.
Mathematical Methods for Diffusion MRI Processing, in: NeuroImage, March 2009, vol. 45, no 1, pp. S111–S122.
C. Lenglet, M. Rousson, R. Deriche.
DTI Segmentation by Statistical Surface Evolution, in: IEEE Transactions on Medical Imaging,, June 2006, vol. 25, no 06, pp. 685–700.
L. Meng, J. Xiang, D. Rose, R. Kotecha, J. Vannest, A. Byars, T. Degrauw.
White Matter Abnormalities in Children with Temporal Lobe Epilepsy: A DTI and MEG Study, in: 17th International Conference on Biomagnetism Advances in Biomagnetism–Biomag2010, Springer, 2010, pp. 397–400.
K. Merboldt, W. Hanicke, J. Frahm.
Self-diffusion NMR Imaging Using Stimulated Echoes, in: J. Magn. Reson., 1985, vol. 64, pp. 479–486.
S. Merlet.
Diffusion MRI & Compressive Sensing, Nice Sophia Antipolis University, September 2013.
I. Mohamed, H. Otsubo, M. Shroff, E. Donner, J. Drake, O. Snead III.
Magnetoencephalography and diffusion tensor imaging in gelastic seizures secondary to a cingulate gyrus lesion, in: Clinical neurology and neurosurgery, 2007, vol. 109, no 2, pp. 182–187.
E. Panagiotaki, T. Schneider, B. Siow, M. G. Hall, M. F. Lythgoe, D. C. Alexander.
Compartment models of the diffusion MR signal in brain white matter: A taxonomy and comparison, in: NeuroImage, 2012, vol. 59, pp. 2241–2254.
A.-C. Philippe, M. Clerc, T. Papadopoulo, R. Deriche.
A nested cortex parcellation combining analysis of MEG forward problem and diffusion MRI tractography, in: IEEE International Symposium on Biomedical Imaging (ISBI), Barcelona, IEEE, May 2012, pp. 518–521.
A.-C. Philippe, T. Papadopoulo, C. Bénar, J.-M. Badier, M. Clerc, R. Deriche.
Propagation of epileptic spikes revealed by diffusion-based constrained MEG source reconstruction, in: 19th International Conference on Biomagnetism (BIOMAG 2014), Halifax, Canada, August 2014.
T. Schultz, A. Fuster, A. Ghosh, R. Deriche, L. Florack, L.-H. Lim.
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Detection of large-scale networks in EEG and comparison with fMRI, in: Proceedings of Biomag, Paris, France, BIOMAG, August 2012.
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Mean apparent propagator (MAP) MRI: a novel diffusion imaging method for mapping tissue microstructure, in: Neuroimage, September 2013, vol. 78, pp. 16–32.
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Generalized Diffusion Tensor Imaging and Analytical Relationships Between Diffusion Tensor Imaging and High Angular Resolution Imaging, in: Magnetic Resonance in Medicine, 2003, vol. 50, pp. 955–965.
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Generalized Scalar Measures for Diffusion MRI Using Trace, Variance and Entropy, in: Magnetic Resonance in Medicine, 2005, vol. 53, no 4, pp. 866-876.