Section: Research Program
Research axis 2: reaction and motion equations for living systems
Personnel
Luis Almeida, Casimir EmakoKazianou, Alexander Lorz, Benoît Perthame, Nicolas Vauchelet.
Projectteam positioning
The Mamba team had initiated and is a leader on the works developed in this research axis. It is a part of a consortium of several mathematicians in France through the ANR Blanc project Kibord, which involves in particular members from others Inria team (DRACULA, REO). Finally, we mention that from Sept. 2017 on, Mamba benefits from the ERC Advanced Grant of Benoît Perthame.
Scientific achievements
We divide this research axis, which relies on the study of partial differential equations for space and time organisation of biological populations, according to various applications using the same type of mathematical formalisms and methodologies: asymptotic analysis, weak solutions, numerical algorithms.
Mathematical modelling for bacterial chemotaxis.
Chemotaxis is the phenomenon in which cells direct their motion in response to a chemical signal present in their environment. Our unique expertise is on mathematical aspects of the kinetic equations which describe the run and tumble motion of bacteria and their asymptotic analysis.
An interdisciplinary collaboration with biophysicists from Institut Curie has been successful on experimental observations concerning the interaction between two species of bacteria and emergence of travelling bands [86]. The mathematical models used in this work are derived in [51] thanks to a diffusive limit of a kinetic system with tumbling modulation along the path. A numerical investigation of this limit is provided in [87]. These works enter into the framework of the PhD of Casimir EmakoKazianou [88]. Recently, we have been able to derive rigorously such kinetic models from a more sophisticated equation incorporating internal variable when cells adapt rapidly to changes in their environment [119].
Aggregation equation.
In the mathematical study of collective behaviour, an important class of models is given by the aggregation equation. In the presence of a nonsmooth interaction potential, solutions of such systems may blow up in finite time. To overcome this difficulty, we have defined weak measurevalued solutions in the sense of duality and its equivalence with gradient flows and entropy solutions in one dimension [100]. The extension to higher dimensions has been studied in [70]. An interesting consequence of this approach is the possibility to use the traditional finite volume approach to design numerical schemes able to capture the good behaviour of such weak measurevalued solutions [93], [99].
Free boundary problems for tumour growth.
Fluid dynamic equations are now commonly used to describe tumour growth with two main classes of models: those which describe tumour growth through the dynamics of the density of tumoral cells subjected to a mechanical stress; those describing the tumour through the dynamics of its geometrical domain thanks to a HeleShawtype free boundary model. The first link between these two classes of models has been rigorously obtained thanks to an incompressible limit in [115] for a simple model. This result has motivated the use of another strategy based on viscosity solutions, leading to similar results, in [102].
Since more realistic systems are used in the analysis of medical images, we have extended these studies to include active motion of cells in [114], viscosity in [120] and proved regularity results in [110]. The limiting HeleShaw free boundary model has been used to describe mathematically the invasion capacity of a tumour by looking for travelling wave solutions, in [118], see also axis 3. It is a fundamental but difficult issue to explain rigorously the emergence of instabilities in the direction transversal to the wave propagation. For a simplified model, a complete explanation is obtained in [103].
Collaborations

Institut Curie, joint work with Axel Buguin on bacterial models for chemotaxis.

Shanghai Jiao Tong University, joint publications with Min Tang on bacterial models for chemotaxis and free boundary problems for tumour growth.

Imperial College London, joint works with José Antonio Carrillo on aggregation equation.

University of Maryland at College Park, UCLA, Univ. of Chicago, Univ. Autónoma de Madrid, Univ. of St. Andrews (Scotland), joint works on mathematics of tumour growth models.