Personnel
Overall Objectives
Research Program
Application Domains
Highlights of the Year
New Software and Platforms
New Results
Bilateral Contracts and Grants with Industry
Partnerships and Cooperations
Dissemination
Bibliography
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Bibliography

Major publications by the team in recent years
[1]
R. Chabiniok, P. Moireau, P.-F. Lesault, A. Rahmouni, J.-F. Deux, D. Chapelle.
Estimation of tissue contractility from cardiac cine-MRI using a biomechanical heart model, in: Biomechanics and Modeling in Mechanobiology, 2012, vol. 11, no 5, pp. 609-630. [ DOI : 10.1007/s10237-011-0337-8 ]
http://hal.inria.fr/hal-00654541
[2]
D. Chapelle, K. Bathe.
The Finite Element Analysis of Shells - Fundamentals - Second Edition, Computational Fluid and Solid Mechanics, Springer, 2011, 410 p. [ DOI : 10.1007/978-3-642-16408-8 ]
http://hal.inria.fr/hal-00654533
[3]
D. Chapelle, N. Cîndea, P. Moireau.
Improving convergence in numerical analysis using observers - The wave-like equation case, in: Mathematical Models and Methods in Applied Sciences, 2012, vol. 22, no 12. [ DOI : 10.1142/S0218202512500406 ]
http://hal.inria.fr/inria-00621052
[4]
D. Chapelle, P. Le Tallec, P. Moireau, M. Sorine.
An energy-preserving muscle tissue model: formulation and compatible discretizations, in: International Journal for Multiscale Computational Engineering, 2012, vol. 10, no 2, pp. 189-211. [ DOI : 10.1615/IntJMultCompEng.2011002360 ]
http://hal.inria.fr/hal-00678772
[5]
D. Chapelle, P. Moireau.
General coupling of porous flows and hyperelastic formulations – From thermodynamics principles to energy balance and compatible time schemes, in: European Journal of Mechanics - B/Fluids, 2014, vol. 46, pp. 82-96, Updated version of previously published research report. [ DOI : 10.1016/j.euromechflu.2014.02.009 ]
https://hal.inria.fr/inria-00520612
[6]
B. Lynch, S. Bancelin, C. Bonod-Bidaud, J.-B. Gueusquin, F. Ruggiero, M.-C. Schanne-Klein, J.-M. Allain.
A novel microstructural interpretation for the biomechanics of mouse skin derived from multiscale characterization, in: Acta Biomaterialia, 2017, vol. 50, pp. 302-311. [ DOI : 10.1016/j.actbio.2016.12.051 ]
https://hal.archives-ouvertes.fr/hal-01531321
[7]
P. Moireau, D. Chapelle, P. Le Tallec.
Joint state and parameter estimation for distributed mechanical systems, in: Computer Methods in Applied Mechanics and Engineering, 2008, vol. 197, no 6-8, pp. 659-677. [ DOI : 10.1016/j.cma.2007.08.021 ]
http://hal.archives-ouvertes.fr/hal-00175623
[8]
P. Moireau, D. Chapelle, P. Le Tallec.
Filtering for distributed mechanical systems using position measurements: perspectives in medical imaging, in: Inverse Problems, 2009, vol. 25, no 3, 035010. [ DOI : 10.1088/0266-5611/25/3/035010 ]
http://hal.archives-ouvertes.fr/hal-00358914
[9]
P. Moireau, D. Chapelle.
Reduced-order Unscented Kalman Filtering with application to parameter identification in large-dimensional systems, in: ESAIM - Control Optimisation and Calculus of Variations, 2010, Published online - See also erratum DOI:10.1051/cocv/2011001. [ DOI : 10.1051/cocv/2010006 ]
http://hal.inria.fr/inria-00550104
[10]
P. Moireau.
A Discrete-time Optimal Filtering Approach for Non-linear Systems as a Stable Discretization of the Mortensen Observer, in: ESAIM: Control, Optimisation and Calculus of Variations, 2017, forthcoming.
https://hal.inria.fr/hal-01671271
[11]
M. Sermesant, R. Chabiniok, P. Chinchapatnam, T. Mansi, F. Billet, P. Moireau, J.-M. Peyrat, K. C. Wong, J. Relan, K. S. Rhode, M. Ginks, P. Lambiase, H. Delingette, M. Sorine, C. A. Rinaldi, D. Chapelle, R. Razavi, N. Ayache.
Patient-Specific Electromechanical Models of the Heart for Prediction of the Acute Effects of Pacing in CRT: a First Validation, in: Medical Image Analysis, January 2012, vol. 16, no 1, pp. 201-215. [ DOI : 10.1016/j.media.2011.07.003 ]
http://hal.inria.fr/inria-00616191
Publications of the year

Doctoral Dissertations and Habilitation Theses

[12]
A. Armiento.
Inverse problems and data assimilation methods applied to protein polymerisation, Université Paris 7 - Diderot, January 2017.
https://hal.inria.fr/tel-01447286

Articles in International Peer-Reviewed Journals

[13]
J.-S. Affagard, F. Wijanto, J.-M. Allain.
Improving the experimental protocol for a more accurate identification of a given mechanical behavior in a single assay: application to skin, in: Strain, August 2017. [ DOI : 10.1111/str.12236 ]
https://hal.archives-ouvertes.fr/hal-01570071
[14]
A. Armiento, P. Moireau, D. Martin, N. Lepejova, M. Doumic, H. Rezaei.
The mechanism of monomer transfer between two structurally distinct PrP oligomers, in: PLoS ONE, July 2017, vol. 12, no 7. [ DOI : 10.1371/journal.pone.0180538 ]
https://hal.archives-ouvertes.fr/hal-01574346
[15]
L. Asner, M. Hadjicharalambous, R. Chabiniok, D. Peressutti, E. Sammut, J. Wong, G. Carr-White, R. Razavi, A. D. King, N. P. Smith, J. Lee, D. Nordsletten.
Patient-specific modeling for left ventricular mechanics using data-driven boundary energies, in: Computer Methods in Applied Mechanics and Engineering, 2017, vol. 314, pp. 269-295. [ DOI : 10.1016/j.cma.2016.08.002 ]
https://hal.archives-ouvertes.fr/hal-01576770
[16]
B. Burtschell, D. Chapelle, P. Moireau.
Effective and energy-preserving time discretization for a general nonlinear poromechanical formulation, in: Computers and Structures, 2017, vol. 182, pp. 313-324. [ DOI : 10.1016/j.compstruc.2016.10.022 ]
https://hal.inria.fr/hal-01395508
[17]
R. Chabiniok, L. Súkupová, D. Kautznerová, J. Tintěra.
Magnetic Resonance Imaging of the Heart and Large Vessels – Survey of methods and new perspectives, in: Česká radiologie, November 2017, pp. 1-28, forthcoming.
https://hal.archives-ouvertes.fr/hal-01667798
[18]
C. Even, C. Marlière, J.-M. Ghigo, J.-M. Allain, A. Marcellan, E. Raspaud.
Recent advances in studying single bacteria and biofilm mechanics, in: Advances in Colloid and Interface Science, 2017, 57 p. [ DOI : 10.1016/j.cis.2017.07.026 ]
https://hal.archives-ouvertes.fr/hal-01566801
[19]
F. Fuentes, B. Keith, L. Demkowicz, P. Le Tallec.
Coupled variational formulations of linear elasticity and the DPG methodology, in: Journal of Computational Physics, November 2017, vol. 348, pp. 715 - 731. [ DOI : 10.1016/j.jcp.2017.07.051 ]
https://hal.archives-ouvertes.fr/hal-01576307
[20]
M. Hadjicharalambous, L. Asner, R. Chabiniok, E. Sammut, J. Wong, D. Peressutti, E. Kerfoot, A. D. King, J. Lee, R. Razavi, N. Smith, G. Carr-White, D. Nordsletten.
Non-invasive Model-Based Assessment of Passive Left-Ventricular Myocardial Stiffness in Healthy Subjects and in Patients with Non-ischemic Dilated Cardiomyopathy, in: Annals of Biomedical Engineering, March 2017, vol. 45, no 3, pp. 605-618.
https://hal.inria.fr/hal-01419936
[21]
J. Hoermann, C. Bertoglio, M. Kronbichler, M. Pfaller, R. Chabiniok, W. Wall.
An adaptive Hybridizable Discontinuous Galerkin approach for cardiac electrophysiology, in: International Journal for Numerical Methods in Biomedical Engineering, 2017, pp. 1 - 20, forthcoming.
https://hal.archives-ouvertes.fr/hal-01672964
[22]
C. Jayyosi, J.-S. Affagard, G. Ducourthial, C. Bonod-Bidaud, B. Lynch, S. Bancelin, F. Ruggiero, M.-C. Schanne-Klein, J.-M. Allain, K. Bruyère-Garnier, M. Coret.
Affine kinematics in planar fibrous connective tissues: an experimental investigation, in: Biomechanics and Modeling in Mechanobiology, 2017, pp. 1–15. [ DOI : 10.1007/s10237-017-0899-1 ]
https://hal.archives-ouvertes.fr/hal-01529263
[23]
J. Joachim, F. Vallée, J. Mateo, A. Le Gall, S. Lenck, S. Millasseau, E. Houdart, A. Mebazaa, E. Gayat.
Velocity–pressure loops for continuous assessment of ventricular afterload: influence of pressure measurement site, in: Journal of Clinical Monitoring and Computing, November 2017, pp. 1-8, forthcoming. [ DOI : 10.1007/s10877-017-0082-3 ]
https://hal.inria.fr/hal-01666355
[24]
M. Landajuela, M. Vidrascu, D. Chapelle, M. A. Fernández.
Coupling schemes for the FSI forward prediction challenge: comparative study and validation, in: International Journal for Numerical Methods in Biomedical Engineering, vol. 33, no 4, e02813 p, 2017. [ DOI : 10.1002/cnm.2813 ]
https://hal.inria.fr/hal-01239931
[25]
A. Laurin, M. G. Lloyd, T. Hachiya, M. Saito, V. E. Claydon, A. Blaber.
New indices from microneurography to investigate the arterial baroreflex, in: Physiological Reports, June 2017, vol. 5, no 12. [ DOI : 10.14814/phy2.13220 ]
https://hal.inria.fr/hal-01555596
[26]
A. Le Gall, A. Follin, B. Cholley, J. Mantz, N. Aissaoui, R. Pirracchio.
Veno-Arterial-ECMO in the Intensive Care Unit:From Technical Aspects to Clinical Practice, in: Anaesthesia Critical Care & Pain Medicine, October 2017, pp. 1-43. [ DOI : 10.1016/j.accpm.2017.08.007 ]
https://hal.inria.fr/hal-01629078
[27]
B. Lynch, S. Bancelin, C. Bonod-Bidaud, J.-B. Gueusquin, F. Ruggiero, M.-C. Schanne-Klein, J.-M. Allain.
A novel microstructural interpretation for the biomechanics of mouse skin derived from multiscale characterization, in: Acta Biomaterialia, 2017, vol. 50, pp. 302-311. [ DOI : 10.1016/j.actbio.2016.12.051 ]
https://hal.archives-ouvertes.fr/hal-01531321
[28]
B. Lynch, C. Bonod-Bidaud, G. Ducourthial, J.-S. Affagard, S. Bancelin, S. Psilodimitrakopoulos, F. Ruggiero, J.-M. Allain, M.-C. Schanne-Klein.
How aging impacts skin biomechanics: a multiscale study in mice, in: Scientific Reports, December 2017, vol. 7, no 1. [ DOI : 10.1038/s41598-017-13150-4 ]
https://hal.archives-ouvertes.fr/hal-01667964
[29]
N. Mitrou, A. Laurin, T. Dick, J. Inskip.
A peak detection method for identifying phase in physiological signals, in: Biomedical Signal Processing and Control, 2017, vol. 31, pp. 452 - 462. [ DOI : 10.1016/j.bspc.2016.07.001 ]
https://hal.inria.fr/hal-01380875
[30]
P. Moireau.
A Discrete-time Optimal Filtering Approach for Non-linear Systems as a Stable Discretization of the Mortensen Observer, in: ESAIM: Control, Optimisation and Calculus of Variations, 2017, forthcoming.
https://hal.inria.fr/hal-01671271
[31]
M. K. Rausch, M. Genet, J. D. Humphrey.
An augmented iterative method for identifying a stress-free reference configuration in image-based biomechanical modeling, in: Journal of Biomechanics, 2017, vol. 58, pp. 227 - 231. [ DOI : 10.1016/j.jbiomech.2017.04.021 ]
https://hal.archives-ouvertes.fr/hal-01571436
[32]
M. Rochoux, A. Collin, C. Zhang, A. Trouvé, D. Lucor, P. Moireau.
Front shape similarity measure for shape-oriented sensitivity analysis and data assimilation for Eikonal equation, in: ESAIM: Proceedings and Surveys, 2017, pp. 1-22, forthcoming.
https://hal.inria.fr/hal-01625575
[33]
F. Vallée, A. Le Gall, J. Joachim, O. Passouant, J. Mateo, A. Mari, S. Millasseau, A. Mebazaa, E. Gayat.
Beat-by-beat assessment of cardiac afterload using descending aortic velocity–pressure loop during general anesthesia: a pilot study, in: Journal of Clinical Monitoring and Computing, January 2017, vol. 113, no 5, pp. 727 - 735. [ DOI : 10.1007/s10877-017-9982-5 ]
https://hal.inria.fr/hal-01629079
[34]
F. Vallée, O. Passouant, A. Le Gall, J. Joachim, J. Mateo, A. Mebazaa, E. Gayat.
Norepinephrine reduces arterial compliance less than phenylephrine when treating general anesthesia-induced arterial hypotension, in: Acta Anaesthesiologica Scandinavica Supplementum, July 2017, vol. 61, no 6, pp. 590 - 600. [ DOI : 10.1111/aas.12905 ]
https://hal.inria.fr/hal-01666364

International Conferences with Proceedings

[35]
R. Chabiniok, P. Moireau, C. Kiesewetter, T. Hussain, R. Razavi, D. Chapelle.
Assessment of atrioventricular valve regurgitation using biomechanical cardiac modeling, in: FIMH 2017 - 9th international conference on Functional Imaging and Modeling of the Heart, Toronto, Canada, LNCS - Lecture Notes in Computer Science, Springer, June 2017, vol. 10263, pp. 401-411.
https://hal.archives-ouvertes.fr/hal-01505834
[36]
A. Le Gall, A. Laurin, F. Vallée, D. Chemla.
Comparison of Systolic Period Duration using Aortic Flow or Pressure Based Methods in Anesthetized Patients, in: Computing in cardioogy, Rennes, France, September 2017.
https://hal.inria.fr/hal-01580305

National Conferences with Proceedings

[37]
M. Prague, R. Thiébaut, P. Moireau, A. Collin.
Joint-state and parameters estimation using nudging and SEIK filters for HIV mechanistic models, in: Journée de la statistique francaise, Avignon, France, June 2017.
https://hal.inria.fr/hal-01579068

Conferences without Proceedings

[38]
M. Genet, L. C. Lee, S. Kozerke.
A continuum finite strain formulation of the equilibrium gap regularizer for finite element image correlation, in: 13ème Colloque National en Calcul des Structures, Giens, France, May 2017.
https://hal.archives-ouvertes.fr/hal-01661810
[39]
M. Genet, L. C. Lee, S. Kozerke.
Equilibrated Warping: Finite Element Image Correlation with Mechanical Regularization, in: FEniCS'2017, Luxembourg, Luxembourg, June 2017.
https://hal.archives-ouvertes.fr/hal-01661825

Patents

[40]
R. Chabiniok, D. Chapelle, A. Le Gall, P. Moireau, F. Vallée.
Dispositif cardiaque, 2017, no 1758006.
https://hal.inria.fr/hal-01580331