Personnel
Overall Objectives
Research Program
Application Domains
Highlights of the Year
New Software and Platforms
New Results
Partnerships and Cooperations
Dissemination
Bibliography
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Bibliography

Publications of the year

Articles in International Peer-Reviewed Journals

[1]
R. Chait, J. Ruess, T. Bergmiller, G. Tkačik, C. C. Guet.
Shaping bacterial population behavior through computer-interfaced control of individual cells, in: Nature Communications, November 2017, vol. 8, no 1, 1535 p. [ DOI : 10.1038/s41467-017-01683-1 ]
https://hal.inria.fr/hal-01669883
[2]
J.-B. Lugagne, S. Sosa Carrillo, M. Kirch, A. Köhler, G. Batt, P. Hersen.
Balancing a genetic toggle switch by real-time feedback control and periodic forcing, in: Nature Communications, December 2017, vol. 8, no 1, pp. 1-8. [ DOI : 10.1038/s41467-017-01498-0 ]
https://hal.inria.fr/hal-01666980
[3]
S. K. Palaniappan, F. Bertaux, M. Pichené, E. Fabre, G. Batt, B. Genest.
Abstracting the dynamics of biological pathways using information theory: a case study of apoptosis pathway, in: Bioinformatics, February 2017, vol. 33, no 13, pp. 1980 - 1986. [ DOI : 10.1093/bioinformatics/btx095 ]
https://hal.inria.fr/hal-01547618
[4]
J. Ruess, H. Koeppl, C. Zechner.
Sensitivity estimation for stochastic models of biochemical reaction networks in the presence of extrinsic variability, in: Journal of Chemical Physics, 2017, vol. 146, no 12, 124122 p. [ DOI : 10.1063/1.4978940 ]
https://hal.archives-ouvertes.fr/hal-01547484
[5]
C. Versari, S. Stoma, K. Batmanov, A. Llamosi, F. Mroz, A. Kaczmarek, M. Deyell, C. Lhoussaine, P. Hersen, G. Batt.
Long-term tracking of budding yeast cells in brightfield microscopy: CellStar and the Evaluation Platform, in: Interface, 2017, vol. 14, no 127, 32 p. [ DOI : 10.1098/rsif.2016.0705 ]
https://hal.inria.fr/hal-01547623

Invited Conferences

[6]
F. Fages.
Model-based Investigation of the Circadian Clock and Cell Cycle Coupling in Mouse Embryonic Fibroblasts: Prediction of RevErb-α Up-regulation During Mitosis, in: Dynamics Days 2017 - XXXVII Dynamics Days Europe International Conference, Szeged, Hungary, June 2017.
https://hal.inria.fr/hal-01651833

International Conferences with Proceedings

[7]
A. Carcano, F. Fages, S. Soliman.
Probably Approximately Correct Learning of Regulatory Networks from Time-Series Data, in: CMSB'17 - 15th International Conference on Computational Methods for Systems Biology, Darmstadt, Germany, J. Feret, H. Koeppl (editors), September 2017, vol. Lecture Notes in Computer Science, no 10545, pp. 74-90.
https://hal.inria.fr/hal-01519826
[8]
Best Paper
F. Fages, G. Le Guludec, O. Bournez, A. Pouly.
Strong Turing Completeness of Continuous Chemical Reaction Networks and Compilation of Mixed Analog-Digital Programs, in: CMSB 2017 - 15th International Conference on Computational Methods in Systems Biology, Darmstadt, Germany, J. Feret, H. Koeppl (editors), Proceedings of the fiveteen international conference on Computational Methods in Systems Biology, CMSB 2017, September 2017, vol. Lecture Notes in Computer Science, no 10545, pp. 108-127.
https://hal.inria.fr/hal-01519828

Scientific Books (or Scientific Book chapters)

[9]
F. Bertaux, D. Drasdo, G. Batt.
System modeling of receptor-induced apoptosis, in: TRAIL, Fas Ligand, TNF and TLR3 in Cancer, O. Micheau (editor), Resistance to Targeted Anti-Cancer Therapeutics, 2017, no 12, https://arxiv.org/abs/1712.06822.
https://hal.inria.fr/hal-01667015

Scientific Popularization

[10]
F. Fages, G. Le Guludec.
Programmes biochimiques et algorithmes mixtes analogiques-digitaux dans la cellule, in: Sciences de la vie, sciences de l’information, T. Gaudin, D. Lacroix, M.-C. Maurel, J.-C. Pomerol (editors), Colloque de Cérisy, ISTE editions, September 2017.
https://hal.inria.fr/hal-01409743

Other Publications

[11]
F. Fages, T. Martinez, D. A. Rosenblueth, S. Soliman.
Influence Networks compared with Reaction Networks: Semantics, Expressivity and Attractors, October 2017, Submitted to IEEE/ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS.
https://hal.inria.fr/hal-01510216
[12]
C.-N. Lai, J.-H. Jiang, F. Fages.
Recombinase-Based Genetic Circuit Optimization, October 2017, pp. 1-4, BioCAS 2017 - 13th IEEE Biomedical Circuits and Systems Conference, Poster.
https://hal.inria.fr/hal-01659183