Overall Objectives
Research Program
Application Domains
New Software and Platforms
New Results
Partnerships and Cooperations
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Section: New Software and Platforms

WhatsHap and pWhatsHap

Functional Description

WhatsHap is a DP approach for haplotype assembly from long reads that works until 20x coverage, solves the minimum error correction problem exactly. pWhatsHap is a parallelisation of the core dynamic programming algorithm of WhatsHap done by M. Aldinucci, A. Bracciali, T. Marschall, M. Patterson, N. Pisanti, and M. Torquati.