Members
Overall Objectives
Research Program
New Software and Platforms
New Results
Bilateral Contracts and Grants with Industry
Partnerships and Cooperations
Dissemination
Bibliography
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PDF e-Pub


Bibliography

Publications of the year

Doctoral Dissertations and Habilitation Theses

[1]
H. Talbot.
Interactive Patient-Specific Simulation of Cardiac Electrophysiology, Université des Sciences et Technologies de Lille, July 2014.
https://hal.inria.fr/tel-01097201

Articles in International Peer-Reviewed Journals

[2]
A. Amelot, E. Stretton, H. Delingette, N. Ayache, S. Froelich, E. Mandonnet.
Expert-validated CSF segmentation of MNI atlas enhances accuracy of virtual glioma growth patterns, in: Journal of Neuro-Oncology, 2014, forthcoming. [ DOI : 10.1007/s11060-014-1645-5 ]
https://hal.inria.fr/hal-01081410
[3]
Y. Komatsu, A. Jadidi, F. Sacher, A. Denis, M. Daly, N. Derval, A. Shah, H. Lehrmann, C.-I. Park, R. Weber, T. Arentz, G. Pache, M. Sermesant, N. Ayache, J. Relan, M. Montaudon, F. Laurent, M. Hocini, M. Haissaguerre, P. Jais, H. Cochet.
Relationship Between MDCT-Imaged Myocardial Fat and Ventricular Tachycardia Substrate in Arrhythmogenic Right Ventricular Cardiomyopathy, in: Journal of the American Heart Association, 2014, vol. 3, no 4, 10 p. [ DOI : 10.1161/JAHA.114.000935 ]
https://hal.inria.fr/hal-01095772
[4]
H. Lombaert, L. Grady, X. Pennec, N. Ayache, F. Cheriet.
Spectral Log-Demons: Diffeomorphic Image Registration with Very Large Deformations, in: International Journal of Computer Vision, May 2014, vol. 107, no 3, pp. 254-271. [ DOI : 10.1007/s11263-013-0681-5 ]
https://hal.inria.fr/hal-00979616
[5]
M. Lorenzi, X. Pennec, G. B. Frisoni, N. Ayache.
Disentangling Normal Aging from Alzheimer's Disease in Structural MR Images, in: Neurobiology of Aging, September 2014. [ DOI : 10.1016/j.neurobiolaging.2014.07.046 ]
https://hal.inria.fr/hal-01061017
[6]
B. Menze, A. Jakab, S. Bauer, J. Kalpathy-Cramer, K. Farahani, J. Kirby, Y. Burren, N. Porz, J. Slotboom, R. Wiest, L. Lanczi, E. Gerstner, M.-A. Weber, T. Arbel, B. Avants, N. Ayache, P. Buendia, L. Collins, N. Cordier, J. Corso, A. Criminisi, T. Das, H. Delingette, C. Demiralp, C. Durst, M. Dojat, S. Doyle, J. Festa, F. Forbes, E. Geremia, B. Glocker, P. Golland, X. Guo, A. Hamamci, K. Iftekharuddin, R. Jena, N. John, E. Konukoglu, D. Lashkari, J. Antonio Mariz, R. Meier, S. Pereira, D. Precup, S. J. Price, T. Riklin-Raviv, S. Reza, M. Ryan, L. Schwartz, H.-C. Shin, J. Shotton, C. Silva, N. Sousa, N. Subbanna, G. Szekely, T. Taylor, O. Thomas, N. Tustison, G. Unal, F. Vasseur, M. Wintermark, D. Hye Ye, L. Zhao, B. Zhao, D. Zikic, M. Prastawa, M. Reyes, K. Van Leemput.
The Multimodal Brain Tumor Image Segmentation Benchmark (BRATS), in: IEEE Transactions on Medical Imaging, 2014, 33 p. [ DOI : 10.1109/TMI.2014.2377694 ]
https://hal.inria.fr/hal-00935640
[7]
A. Porras, M. Alessandrini, M. De Craene, N. Duchateau, M. Sitges, B. Bijnens, H. Delingette, M. Sermesant, J. D'Hooge, A. Frangi, G. Piella.
Improved Myocardial Motion Estimation Combining Tissue Doppler and B-Mode Echocardiographic Images, in: IEEE Transactions on Medical Imaging, June 2014, vol. 33, no 11, pp. 2098 - 2106. [ DOI : 10.1109/TMI.2014.2331392 ]
https://hal.inria.fr/hal-01095151
[8]
A. Suinesiaputra, B. Cowan, A. O. Al-Agamy, M. A. Alattar, N. Ayache, A. S. Fahmy, A. M. Khalifa, P. Medrano-Gracia, M.-P. Jolly, A. H. Kadish, D. C. Lee, J. Margeta, S. K. Warfield, A. Young.
A Collaborative Resource to Build Consensus for Automated Left Ventricular Segmentation of Cardiac MR Images, in: Medical Image Analysis, 2014, vol. 18, no 1, pp. 50-62. [ DOI : 10.1016/j.media.2013.09.001 ]
https://hal.inria.fr/hal-00857223
[9]
Y. Tarabalka, G. Charpiat, L. Brucker, B. Menze.
Spatio-Temporal Video Segmentation with Shape Growth or Shrinkage Constraint, in: IEEE Transactions on Image Processing, September 2014, vol. 23, no 9, pp. 3829-3840.
https://hal.inria.fr/hal-01052543
[10]
K. C. Wong, M. Sermesant, K. Rhode, M. Ginks, C. Aldo Rinaldi, R. Razavi, H. Delingette, N. Ayache.
Velocity-based cardiac contractility personalization from images using derivative-free optimization, in: Journal of the mechanical behavior of biomedical materials, December 2014, 17 p. [ DOI : 10.1016/j.jmbbm.2014.12.002 ]
https://hal.inria.fr/hal-01095725

International Conferences with Proceedings

[11]
M. Alessandrini, B. Heyde, S. Cygan, M. Sermesant, H. Delingette, O. Bernard, D. Craene, J. D'Hooge.
Elastic registration vs. block matching for quantification of cardiac function with 3D ultrasound: Initial results of a direct comparison in silico based on a new evaluation pipeline, in: IEEE International Ultrasonics Symposium, Chicago, United States, September 2014, pp. 608 - 611. [ DOI : 10.1109/ULTSYM.2014.0149 ]
https://hal.inria.fr/hal-01095790
[12]
Best Paper
C. Audigier, T. Mansi, H. Delingette, S. Rapaka, V. Mihalef, D. Carnegie, E. Boctor, M. Choti, A. Kamen, D. Comaniciu, N. Ayache.
Parameter Estimation For Personalization of Liver Tumor Radiofrequency Ablation, in: MICCAI Workshop on Abdominal Imaging – Computational and Clinical Applications, Boston, United States, September 2014.
https://hal.inria.fr/hal-01067709
[13]
R. Cabrera Lozoya, J. Margeta, L. Le Folgoc, Y. Komatsu, B. Benjamin, J. Relan, H. Cochet, M. Haissaguerre, P. Jais, N. Ayache, M. Sermesant.
Confidence-based Training for Clinical Data Uncertainty in Image-based Prediction of Cardiac Ablation Targets, in: bigMCV Workshop MICCAI 2014, Boston, United States, September 2014.
https://hal.inria.fr/hal-01069085
[14]
M. De Craene, M. Alessandrini, P. Allain, S. Marchesseau, I. Waechter-Stehle, J. Weese, E. Saloux, H. G. Morales, R. Cuingnet, H. Delingette, M. Sermesant, O. Bernard, J. D 'hooge.
Generation of ultra-realistic synthetic echocardiographic sequences, in: IEEE 11th International Symposium on Biomedical Imaging (ISBI), Beijing, China, IEEE, April 2014, pp. 73 - 76. [ DOI : 10.1109/ISBI.2014.6867812 ]
https://hal.inria.fr/hal-01095133
[15]
S. Giffard-Roisin, S. Marchesseau, L. Le Folgoc, H. Delingette, M. Sermesant.
Evaluation of Personalised Canine Electromechanical Models, in: Proceedings of the 5th international STACOM workshop, Boston, United States, O. Camara, T. Mansi, M. Pop, K. Rhode, M. Sermesant, A. Young (editors), Springer, September 2014, no 8896.
https://hal.inria.fr/hal-01087841
[16]
P. Gori, O. Colliot, L. Marrakchi-Kacem, Y. Worbe, F. De Vico Fallani, M. Chavez, S. Lecomte, C. Poupon, A. Hartmann, N. Ayache, S. Durrleman.
A Prototype Representation to Approximate White Matter Bundles with Weighted Currents, in: MICCAI 2014 - 17th International Conference on Medical Image Computing and Computer Assisted Intervention, Boston, United States, September 2014.
https://hal.inria.fr/hal-01010702
[17]
B. Khanal, M. Lorenzi, N. Ayache, X. Pennec.
A Biophysical Model of Shape Changes due to Atrophy in the Brain with Alzheimer's Disease, in: MICCAI 2014 - 17th International Conference Medical Image Computing and Computer-Assisted Intervention, Boston, United States, P. Golland, N. Hata, C. Barillot, J. Hornegger, R. Howe (editors), LNCS - Lecture Notes in Computer Science, Springer, Springer, September 2014, vol. 8674, pp. 41-48. [ DOI : 10.1007/978-3-319-10470-6_6 ]
https://hal.inria.fr/hal-01006478
[18]
M. Kohandani Tafreshi, N. Linard, B. André, N. Ayache, T. Vercauteren.
Semi-automated Query Construction for Content-based Endomicroscopy Video Retrieval, in: Medical Image Computing and Computer Assisted Intervention (MICCAI), Boston, United States, September 2014.
https://hal.inria.fr/hal-01010673
[19]
M. Kohandani Tafreshi, B. Napoléon, A.-I. Lemaistre, M. Giovannini, V. Joshi, J. Dauguet, N. Ayache, B. André.
Smart Atlas for Supporting the Interpretation of needle-based Confocal Laser Endomicroscopy (nCLE) of Pancreatic Cysts: First Classification Results of a Computer-Aided Diagnosis Software based on Image Recognition, in: Digestive Disease Week (DDW 2014), Chicago, United States, May 2014.
https://hal.inria.fr/hal-01010701
[20]
L. Le Folgoc, H. Delingette, A. Criminisi, N. Ayache.
Sparse Bayesian Registration, in: MICCAI - 17th International Conference on Medical Image Computing and Computer Assisted Intervention, Boston, United States, September 2014. [ DOI : 10.1007/978-3-319-10404-1_30 ]
https://hal.inria.fr/hal-01006605
[21]
H. Lombaert, D. Zikic, A. Criminisi, N. Ayache.
Laplacian Forests: Semantic Image Segmentation by Guided Bagging, in: MICCAI 2014 - 17th International Conference Medical Image Computing and Computer-Assisted Intervention, Boston, United States, P. Golland, N. Hata, C. Barillot, J. Hornegger, R. Howe (editors), LNCS - Lecture Notes in Computer Science, Springer, September 2014, vol. 8674. [ DOI : 10.1007/978-3-319-10470-6_62 ]
https://hal.inria.fr/hal-01009672
[22]
M. , H. Delingette, J. Kalpathy-Cramer, E. Gerstner, H. A. Shih, T. Batchelor, J. Unkelbach, N. Ayache.
Multimodal Analysis of Vasogenic Edema in Glioblastoma Patients for Radiotherapy Planning, in: Workshop Image-Guided Adaptive Radiation Therapy, Boston, United States, September 2014.
https://hal.inria.fr/hal-01093397
[23]
J. Margeta, A. Criminisi, D. C. Lee, N. Ayache.
Recognizing cardiac magnetic resonance acquisition planes, in: MIUA - Medical Image Understanding and Analysis Conference - 2014, London, United Kingdom, Reyes-Aldasoro, Constantino Carlos and Slabaugh, Gregory, July 2014.
https://hal.inria.fr/hal-01009952
[24]
N. Miolane, X. Pennec.
Statistics on Lie groups : a need to go beyond the pseudo-Riemannian framework, in: MaxEnt 2014, Amboise, France, September 2014.
https://hal.inria.fr/hal-01091515
[25]
H. Talbot, F. Spadoni, C. Duriez, M. Sermesant, S. Cotin, H. Delingette.
Interactive Training System for Interventional Electrocardiology Procedures, in: 6th International Symposium on Biomedical Simulation - ISBMS 2014, Strabsourg, France, October 2014, pp. 11 - 19. [ DOI : 10.1007/978-3-319-12057-7_2 ]
https://hal.inria.fr/hal-01078209

National Conferences with Proceedings

[26]
H. Darmanté, B. Bugnas, R. B. D. Dompsure, L. Barresi, N. Miolane, X. Pennec, F. De Paretti, N. Bronsard.
Analyse biométrique de l’anneau pelvien en 3 dimensions – à propos de 100 scanners, in: 89e Réunion annuelle de la SOFCOT, Paris, France, Revue de Chirurgie Orthopédique et Traumatologique, November 2014, vol. 100, no 7. [ DOI : 10.1016/j.rcot.2014.09.076 ]
https://hal.inria.fr/hal-01094711

Conferences without Proceedings

[27]
M. Kohandani Tafreshi, V. Joshi, A. Meining, C. Lightdale, M. Giovannini, J. Dauguet, N. Ayache, B. André.
Smart Atlas for Supporting the Interpretation of probe-based Confocal Laser Endomicroscopy (pCLE) of Biliary Strictures: First Classification Results of a Computer-Aided Diagnosis Software based on Image Recognition, in: Digestive Disease Week (DDW 2014), Chicago, United States, May 2014.
https://hal.inria.fr/hal-01010765
[28]
M. Kohandani Tafreshi, Y.-Q. Li, R. Pittayanon, D. Pleskow, V. Joshi, P. Chiu, J. Dauguet, N. Ayache, B. André.
Smart Atlas for Supporting the Interpretation of probe-based Confocal Laser Endomicroscopy (pCLE) of Gastric Lesions: First Classification Results of a Computer-Aided Diagnosis Software based on Image Recognition, in: Digestive Disease Week (DDW 2014), Chicago, United States, May 2014.
https://hal.inria.fr/hal-01010762

Scientific Books (or Scientific Book chapters)

[29]
Spatio-temporal Image Analysis for Longitudinal and Time-Series Image Data, Lecture notes in computer science, Springer International Publishing, Cambridge, United States, January 2015, vol. 8682, 89 p. [ DOI : 10.1007/978-3-319-14905-9 ]
https://hal.inria.fr/hal-01114150
[30]
A. Frangi, D. Friboulet, N. Ayache, H. Delingette, T. Glatard, C. Hoogendoorn, L. Humbert, K. Lekadir, I. Larrabide, Y. Martelli, F. Peyrin, X. Planes, M. Sermesant, M. Villa-Uriol, T. Whitmarsh, D. Atkinson.
Image Based Modelling, in: Computational Biomedicine, P. Coveney, V. Diaz, P. Hunter, M. Viceconti (editors), Oxford University Press, 2014, pp. 59 - 82.
https://hal.archives-ouvertes.fr/hal-01016455
[31]
M. Lorenzi, X. Pennec.
Discrete Ladders for Parallel Transport in Transformation Groups with an Affine Connection Structure, in: Geometric Theory of Information, F. Nielsen (editor), Signals and Communication Technology, Springer, 2014, pp. 243-271. [ DOI : 10.1007/978-3-319-05317-2_9 ]
https://hal.inria.fr/hal-00933229
[32]
X. Pennec, P. Fillard.
Statistical Computing On Non-Linear Spaces For Computational Anatomy, in: Handbook of Biomedical Imaging: Methodologies and Clinical Research, N. Paragios, J. Duncan, N. Ayache (editors), Springer, 2014, forthcoming.
https://hal.inria.fr/inria-00616201

Books or Proceedings Editing

[33]
S. Durrleman, T. Fletcher, G. Gerig, M. Niethammer, X. Pennec (editors)
Spatio-temporal Image Analysis for Longitudinal and Time-Series Image Data, Lecture Notes in Computer Science, Springer, United States, 2015, vol. 8682.
https://hal.inria.fr/hal-01108202
[34]
N. Paragios, J. Duncan, N. Ayache (editors)
Handbook of Biomedical Imaging: Methodologies and Clinical Research, Springer, 2014, 590 p.
https://hal.inria.fr/inria-00616178

Internal Reports

[35]
M. Bauer, M. Bruveris, P. Harms, B. Khesin, S. Marsland, P. Michor, K. Modin, O. Müller, X. Pennec, S. Sommer, F.-X. Vialard.
Math in the Cabin - Shape Analysis Workshop in Bad Gastein, Brunel University London ; University of Vienna, July 2014.
https://hal.archives-ouvertes.fr/hal-01076953

Other Publications

[36]
L. Le Folgoc, H. Delingette, A. Criminisi, N. Ayache.
Technical Appendix on Sparse Bayesian Regression, September 2014, MICCAI - 17th International Conference on Medical Image Computing and Computer Assisted Intervention, Technical appendix to a MICCAI 2014 conference paper. Loïc Le Folgoc, Hervé Delingette, Antonio Criminisi, and Nicholas Ayache: Sparse Bayesian Registration.
https://hal.inria.fr/hal-01002861
[37]
C. Vandersteen, T. Demarcy, H. Delingette, C. Raffaelli, J. Laudanski, T. Pourcher, J. Darcourt, P. Franken, D. Gnansia, N. Ayache, N. Guevara.
Teaching tool for advanced visualization of temporal bone structures by fusion of μCT and CT scan images, October 2014, 8th International Symposium on Objective Measures in Auditory Implants. [ DOI : 10.13140/2.1.1517.6007 ]
https://hal.inria.fr/hal-01108877
[38]
A. S. Vemuri, A. Sportes, S. A. Nicolau, J. Marescaux, N. Ayache, L. Soler.
Video Synchronization: An Approach to Biopsy Site Re-localization, December 2014, 1. Introduction2. Related work3. System setup4. Evaluation.
https://hal.inria.fr/hal-01089196
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