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Raweb 2010
Presentation of the Team BAMBOO
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BAMBOO
An algorithmic view on genomes, cells, and environments
2010 Research Team Activity Report
Grenoble - Rhône-Alpes
Field :
Computational Sciences for Biology, Medicine and the Environment
Theme : Computational Biology and Bioinformatics
Presentation of the Team
- Activity Report in
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Members
Overall Objectives
Highlights
Scientific Foundations
Formal methods
Symbiosis
Intracellular interactions
Application Domains
Biology with a focus on symbiosis
Software
AcypiCyc
Alfacinha
BaobabLuna
Cassis
Cravela
C3P
DCJ2HP
Ed'Nimbus
GeM
Hogenom
HoSeqI
kisSnp
MetExplore
Migal
MotusWEB
Motus
Njplot
OBIWarehouse
PhEVER
PepLine
PhyloJava
Pitufo
Prunier
PSbR
Repseek
Sarment
SeaView
Smile
SymBioCyc
Tuiuiu
UniPathway
New Results
SNP identification from non assembled short sequenced reads
Buchnera aphidicola genetic network exploration
Elaboration of a combination of measures distinguishes pre-miRNAs from other stem-loops
Chemical organisations in metabolic networks
Graph-based analysis of the metabolic exchanges between a host and its endosymbionts
Development of a web server for the exploration of metabolic networks
Metabolic network comparison
Pea aphid genome and metabolism annotation
Sinorhizobium meliloti and genomic scale modelling of nodulating species
Close 3D proximity of evolutionary breakpoints arguing for the notion of spatial synteny
Bayesian sampling of genomic rearrangement scenarios via Double Cut and Join
Reconstruction of ancestral genomes
Detection of lateral gene transfers by statistical reconciliation of phylogenetic forests
The location of transposable element in the human genome is dependent on the function of genes
Mod/Resc Parsimony Inference
Bemisia tabaci species complex
Polymorphism of the dependence phenotype in the Asobara tabida-Wolbachia association
Other Grants and Activities
Regional Initiatives
National Initiatives
European Initiatives
Exterior research visitors
Dissemination
Organisational activities
Editorial activities
Other administrative activities
Seminars, talks and posters
Participation to PhD committees
Teaching
Bibliography
Publications of the year