Team ATHENA

Members
Overall Objectives
Scientific Foundations
Application Domains
Software
New Results
Other Grants and Activities
Dissemination
Bibliography

Bibliography

Major publications by the team in recent years

[1]
C. Bénar, T. Papadopoulo, B. Torrésani, M. Clerc.
Consensus Matching Pursuit for Multi-Trial EEG Signals, in: Journal of Neuroscience Methods, 2009, vol. 180, p. 161–170. [ DOI : DOI: 10.1016/j.jneumeth.2009.03.005 ]
http://www.sciencedirect.com/science/article/B6T04-4VWHVX5-2/2/e6ebdc581a60cde843503fe30f9940d1
[2]
M. Clerc, J. Kybic.
Cortical mapping by Laplace-Cauchy transmission using a boundary element method, in: Inverse Problems, 2007, vol. 23, p. 2589–2601.
http://stacks.iop.org/0266-5611/23/2589
[3]
R. Deriche, J. Calder, M. Descoteaux.
Optimal Real-Time Q-Ball Imaging Using Regularized Kalman Filtering with Incremental Orientation Sets., in: Medical Image Analysis, August 2009, vol. 13, no 4, p. 564–579.
http://dx.doi.org/10.1016/j.media.2009.05.008
[4]
M. Descoteaux, E. Angelino, S. Fitzgibbons, R. Deriche.
Regularized, Fast, and Robust Analytical Q-Ball Imaging, in: Magnetic Resonance in Medicine, 2007, vol. 58, no 3, p. 497–510.
ftp://ftp-sop.inria.fr/odyssee/Publications/2007/descoteaux-angelino-etal:07.pdf
[5]
M. Descoteaux, R. Deriche, T. R. Knosche, A. Anwander.
Deterministic and Probabilistic Tractography Based on Complex Fibre Orientation Distributions, in: IEEE Transactions in Medical Imaging, February 2009, vol. 28, no 2, p. 269–286.
ftp://ftp-sop.inria.fr/odyssee/Publications/2009/descoteaux-deriche-etal:09.pdf
[6]
J. Kybic, M. Clerc, T. Abboud, O. Faugeras, R. Keriven, T. Papadopoulo.
A Common Formalism for the Integral Formulations of the Forward EEG Problem, in: IEEE Transactions on Medical Imaging, January 2005, vol. 24, p. 12–28.
ftp://ftp-sop.inria.fr/odyssee/Publications/2005/kybic-clerc-etal:05.pdf
[7]
C. Lenglet, J. S. W. Campbell, M. Descoteaux, G. Haro, P. Savadjiev, D. Wassermann, A. Anwander, R. Deriche, G. B. Pike, G. Sapiro, K. Siddiqi, P. Thompson.
Mathematical Methods for Diffusion MRI Processing, in: NeuroImage, March 2009, vol. 45, no 1, p. S111-S122..
ftp://ftp-sop.inria.fr/odyssee/Publications/2009/lenglet-campbell-etal:09.pdf
[8]
C. Lenglet, M. Rousson, R. Deriche, O. Faugeras.
Statistics on the Manifold of Multivariate Normal Distributions: Theory and Application to Diffusion Tensor MRI Processing, in: Journal of Mathematical Imaging and Vision, October 2006, vol. 25, no 3, p. 423-444.
ftp://ftp-sop.inria.fr/odyssee/Publications/2006/lenglet-rousson-etal:06.pdf
[9]
S. Vallaghé, T. Papadopoulo, M. Clerc.
The adjoint method for general EEG and MEG sensor-based lead field equations, in: Physics in Medicine and Biology, 2009, vol. 54, p. 135–147.
ftp://ftp-sop.inria.fr/odyssee/Publications/2009/vallaghe-papadopoulo-etal:09.pdf
[10]
S. Vallaghé, T. Papadopoulo.
A Trilinear Immersed Finite Element Method for Solving the Electroencephalography Forward Problem, in: SIAM Journal on Scientific Computing, 2010, vol. 32, no 4, p. 2379–2394. [ DOI : 10.1137/09075038X ]
http://link.aip.org/link/?SCE/32/2379/1

Publications of the year

Doctoral Dissertations and Habilitation Theses

[11]
D. Wassermann.
Automated In Vivo Dissection of White Matter Structures from Diffusion Magnetic Resonance Imaging, Nice Sophia-Antipolis University, April 2010.

Articles in International Peer-Reviewed Journal

[12]
S. Blanchard, T. Papadopoulo, C. Bénar, N. Voges, M. Clerc, H. Benali, J. Warnking, O. David, F. Wendling.
Relationship Between Flow and Metabolism in BOLD Signals: Insights from Biophysical Models, in: Brain Topography, 2010.
http://dx.doi.org/10.1007/s10548-010-0166-6
[13]
B. Cottereau, J. Lorenceau, A. Gramfort, M. Clerc, B. Thirion, S. Baillet.
Phase delays within visual cortex shape the response to steady-state visual stimulation., in: NeuroImage, October 2010.
http://hal.inria.fr/inria-00526019
[14]
M. Descoteaux, R. Deriche, D. Le Bihan, J.-F. Mangin, C. Poupon.
Multiple q-Shell Diffusion Propagator Imaging, in: Medical Image Analysis, July 2010.
http://dx.doi.org/10.1016/j.media.2010.07.001
[15]
J. Fruitet, D. J. Mcfarland, J. R. Wolpaw.
A comparison of regression techniques for a two-dimensional sensorimotor rhythm-based brain-computer interface., in: Journal of Neural Engineering, 2010, vol. 7, no 1.
http://hal.inria.fr/inria-00498774
[16]
A. Gramfort, R. Keriven, M. Clerc.
Graph-Based Variability Estimation in Single-Trial Event-Related Neural Responses, in: IEEE Trans. Biomed. Engin., 2010, vol. 56, no 5, p. 1051–1061.
http://hal.inria.fr/inria-00497023
[17]
A. Gramfort, T. Papadopoulo, S. Baillet, M. Clerc.
Tracking cortical activity from M/EEG using graph-cuts with spatiotemporal constraints, in: NeuroImage, 2010. [ DOI : 10.1016/j.neuroimage.2010.09.087 ]
http://hal.inria.fr/inria-00526020/en/
[18]
A. Gramfort, T. Papadopoulo, E. Olivi, M. Clerc.
OpenMEEG: opensource software for quasistatic bioelectromagnetics, in: BioMedical Engineering OnLine, September 2010, vol. 9, no 45.
http://hal.inria.fr/inria-00523624
[19]
X. Li, A. Messé, G. Marrelec, M. Pélégrini-Issac, H. Benali.
An enhanced voxel-based morphometry method to investigate structural changes: application to Alzheimer's disease, in: Neuroradiology, 2010, vol. 52, no 3, p. 203–213.
http://dx.doi.org/10.1007/s00234-009-0600-1
[20]
S. Vallaghé, T. Papadopoulo.
A Trilinear Immersed Finite Element Method for Solving the Electroencephalography Forward Problem, in: SIAM Journal on Scientific Computing, 2010, vol. 32, no 4, p. 2379–2394. [ DOI : 10.1137/09075038X ]
http://link.aip.org/link/?SCE/32/2379/1
[21]
D. Wassermann, L. Bloy, E. Kanterakis, R. Verma, R. Deriche.
Unsupervised white matter fiber clustering and tract probability map generation: Applications of a Gaussian process framework for white matter fibers, in: Neuroimage, May 2010, vol. 51, no 1, p. 228–241.
http://dx.doi.org/10.1016/j.neuroimage.2010.01.004

Invited Conferences

[22]
M. Clerc, A. Gramfort, E. Olivi, T. Papadopoulo.
The symmetric BEM: bringing in more variables for better accuracy, in: Proceedings of Biomag, 2010.
http://hal.inria.fr/inria-00497081
[23]
T. Papadopoulo, S. Vallaghé, M. Clerc.
The adjoint method for general EEG and MEG sensor-based lead field equations, in: Proceedings of Biomag, 2010.
http://hal.inria.fr/inria-00497088

International Peer-Reviewed Conference/Proceedings

[24]
S. Baillet, R. Leahy, F. Tadel, J. Mosher, A. Delorme, S. Makeig, R. Oostenveld, M. S. Hämäläinen, S. Dalal, J. Zumer, M. Clerc, C. Wolters, S. Kiebel, O. Jensen.
Academic Software Toolboxes for the Analysis of MEG Data, in: Biomag Workshop on Advances in Biomagnetism, S. Supek, A. Susac (editors), IFMBE Proceedings, Springer, 2010, vol. 28, p. 101-104.
http://hal.inria.fr/inria-00497071/en/
[25]
E. Caruyer, I. Aganj, R. L. Muetzel, C. Lenglet, G. Sapiro, R. Deriche.
Online orientation distribution function reconstruction in constant solid angle and its application to motion detection in HARDI, in: International Symposium on Biomedical Imaging: From Nano to Macro, April 2010.
[26]
J. Cheng, A. Ghosh, R. Deriche, T. Jiang.
Model-Free, Regularized, Fast, and Robust Analytical Orientation Distribution Function Estimation, in: Medical Image Computing and Computer-Assisted Intervention - MICCAI, Lecture Notes in Computer Science, Springer, 2010, vol. 6361, p. 648-656.
http://hal.inria.fr/docs/00/49/69/29/PDF/ODF_MICCAI2010.pdf
[27]
J. Cheng, A. Ghosh, T. Jiang, R. Deriche.
Fast, Model-Free , Analytical ODF Reconstruction from the Q-Space Signal, in: 16th Annual Meeting of the Organization for Human Brain Mapping, Barcelona, June 2010.
http://hal.inria.fr/docs/00/49/72/43/PDF/ODF_OHBM2010.pdf
[28]
J. Cheng, A. Ghosh, T. Jiang, R. Deriche.
Fast, model-free, analytical diffusion PDF profile estimation from the DWI signals, in: 16th Annual Meeting of the Organization for Human Brain Mapping, Barcelona, June 2010.
http://hal.inria.fr/docs/00/49/72/44/PDF/PDF_OHBM2010.pdf
[29]
J. Cheng, A. Ghosh, T. Jiang, R. Deriche.
Model-Free and Analytical EAP Reconstruction via Spherical Polar Fourier Diffusion MRI, in: Medical Image Computing and Computer-Assisted Intervention - MICCAI, 2010, vol. 6361, p. 590-597.
http://dx.doi.org/10.1007/978-3-642-15705-9_72
[30]
J. Cheng, A. Ghosh, T. Jiang, R. Deriche.
Riemannian Median and Its Applications for Orientation Distribution Function Computing, in: Proceedings ISMRM, 2010.
http://hal.inria.fr/docs/00/49/72/46/PDF/Riemannian_Median_for_ODF_ISMRM2010.pdf
[31]
M. Descoteaux, C. G. Koay, P. J. Basser, R. Deriche.
Analytical Q-Ball Imaging with Optimal Regularization, in: ISMRM 18th Scientific Meeting and Exhibition, May 2010.
http://www.dmi.usherb.ca/~descotea/publications/descoteaux-koay-etal-ismrm2010.pdf
[32]
J. Fruitet, M. Clerc.
Reconstruction of cortical sources activities for online classification of electroencephalographic signals., in: EMBC: Proceedings of the 30th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2010.
http://hal.inria.fr/inria-00498768
[33]
A. Ghosh, R. Deriche.
Fast and Closed-Form Ensemble-Average-Propagator Approximation from the 4th-Order Diffusion Tensor, in: IEEE International Symposium on Biomedical Imaging: From Nano to Macro, IEEE Press, April 2010, p. 1105–1108.
http://hal.inria.fr/inria-00496877
[34]
A. Ghosh, E. Özarslan, R. Deriche.
Challenges in Reconstructing the Propagator via a Cumulant Expansion of the One-Dimensional q-Space MR Signal, in: Proceedings ISMRM, May 2010.
http://hal.inria.fr/inria-00496885
[35]
C. Malherbe, É. Bardinet, A. Messé, V. Perlbarg, G. Marrelec, M. Pélégrini-Issac, J. Yelnik, S. Lehéricy, H. Benali.
A bootstrap method to improve brain subcortical network segregation in resting-state fMRI data, in: Proceedings of Compstat, 2010.
[36]
C. Malherbe, A. Messé, M. Pélégrini-Issac, S. Lehéricy, H. Benali.
Comparing functional and anatomical segregation in the basal ganglia using fMRI and fiber tracking, in: Proceedings of the 16th International Conference on Functional Mapping of the Human Brain, 2010.
[37]
L. Marrakchi-Kacem, F. Poupon, P. Roca, A. Tucholka, C. Delmaire, É. Bardinet, M. A. Sharman, R. Valabrègue, A. Messé, C. Malherbe, H. Benali, A. Durr, J.-F. Mangin, S. Lehéricy, C. Poupon.
Probabilistic Atlas of the Connections between the basal ganglia and the cortex, in: Proceedings of the ISMRM 18th Annual Scientific Meeting and Exhibition, 2010.
[38]
A. Messé, S. Caplain, G. Paradot, D. Garrigue, J.-F. Mineo, G. Soto Ares, D. Ducreux, F. Vignaud, G. Rozec, H. Desal, M. Pélégrini-Issac, M. Montreuil, H. Benali, S. Lehéricy.
Diffusion tensor imaging and white matter lesions at the subacute stage in mild traumatic brain injury with persistent neurobehavioral impairment, in: Human Brain Mapping, 2010. [ DOI : doi: 10.1002/hbm.21092 ]
http://onlinelibrary.wiley.com/doi/10.1002/hbm.21092/abstract
[39]
A. Messé, C. Delmaire, Y. Worbe, G. Marrelec, R. Valabrègue, C. Malherbe, J. Yelnik, L. Marrakchi-Kacem, C. Poupon, É. Bardinet, A. Durr, H. Benali, S. Lehéricy.
Connectivity-based delineation of basal ganglia using hierarchical classification, in: Proceedings of the 16th International Conference on Functional Mapping of the Human Brain, 2010.
[40]
A. Messé, G. Marrelec, M. Pélégrini-Issac, H. Benali.
A spatial autoregressive model to link structure to function: a combined fMRI and DTI approach, in: Proceedings of the 16th International Conference on Functional Mapping of the Human Brain, 2010.
[41]
E. Olivi, M. Clerc, T. Papadopoulo.
Domain decomposition for coupling finite and boundary element methods in EEG, in: Proceedings of Biomag, 2010.
http://hal.inria.fr/inria-00497099
[42]
E. Olivi, M. Clerc, T. Papadopoulo.
Domain decomposition for coupling finite and boundary element methods with non-matching grids in Electro-Encephalography, in: Proceedings of ECCM, 2010.
[43]
M. A. Sharman, J. Cohen-Adad, M. Descoteaux, A. Messé, H. Benali, S. Lehéricy.
Impact of outliers in DTI and Q-Ball imaging – clinical implications and correction strategies, in: Proceedings of the ISMRM 18th Annual Scientific Meeting and Exhibition, 2010.
[44]
S. Vallaghé, T. Papadopoulo.
A trilinear immersed FEM for solving the EEG forward problem, in: Proceedings of ECCM, 2010.
[45]
D. Wassermann, J. Cohen-Adad, S. Lehéricy, H. Benali, S. Rossignol, R. Deriche.
Fully Automated Straightening of the Spinal Cord using Fiber Tractography, in: 18th. International Symposium on Magnetic Resonance in Medicine, 2010.
http://hal.inria.fr/inria-00496905
[46]
D. Wassermann, J. Cohen-Adad, S. Lehéricy, H. Benali, S. Rossignol, R. Deriche.
Straightening the spinal cord using fiber tractography, in: International Symposium on Biomedical Imaging, 2010.
http://hal.inria.fr/inria-00496908

National Peer-Reviewed Conference/Proceedings

[47]
N. Voges, S. Blanchard, F. Wendling, O. David, H. Benali, T. Papadopoulo, M. Clerc, C. Bénar.
Application of a hemodynamic model to epileptic spikes, in: Neurocomp, 2010.

Workshops without Proceedings

[48]
S. Merlet, R. Deriche.
Compressed Sensing for Accelerated EAP Recovery in Diffusion MRI, in: Proceedings Computational Diffusion MRI - MICCAI Workshop, September 2010.
http://cmic.cs.ucl.ac.uk/cdmri10/proceedings.pdf
[49]
N. Voges, S. Blanchard, F. Wendling, H. Benali, O. David, T. Papadopoulo, M. Clerc, C. Bénar.
Investigation of BOLD responses to epileptic spikes: a combined modeling and data analysis approach, in: Human Brain Mapping, 2010.

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