Team VisAGeS

Overall Objectives
Scientific Foundations
Application Domains
New Results
Other Grants and Activities


Major publications by the team in recent years

I. Corouge, P. Hellier, B. Gibaud, C. Barillot.
Inter-individual functional mapping: a non linear local approach, in: Neuroimage, 2003, vol. 19, no 4, p. 1337-1348.
H. P. Hartung, R. Gonsette, N. Konig, H. Kwiecinski, A. Guseo, S. P. Morrissey, H. Krapf, T. Zwingers.
Mitoxantrone in progressive multiple sclerosis: a placebo-controlled, double-blind, randomised, multicentre trial, in: Lancet, 2002, vol. 360, no 9350, p. 2018-25, 0140-6736 Clinical Trial Journal Article Multicenter Study Randomized Controlled Trial.
P. Hellier, C. Barillot.
Coupling dense and landmark-based approaches for non rigid registration, in: IEEE Transactions on Medical Imaging, 2003, vol. 22, no 2, p. 217-227.
P. Hellier, C. Barillot, E. Mémin, P. Pérez.
Hierarchical estimation of a dense deformation field for 3D robust registration, in: IEEE Transactions on Medical Imaging, 2001, vol. 20, no 5, p. 388-402.
P. Jannin, X. Morandi, O. Fleig, E. Le Rumeur, P. Toulouse, B. Gibaud, J. Scarabin.
Integration of sulcal and functional information for multimodal neuronavigation, in: Journal of Neurosurgery, 2002, vol. 96, p. 713-723.
G. Le Goualher, C. Barillot, Y. Bizais.
Three-dimensional segmentation and representation of cortical sulci using active ribbons, in: Int. J. of Pattern Recognition and Artificial Intelligence, 1997, vol. 11, no 8, p. 1295-1315.
G. Le Goualher, E. Procyk, D. L. Collins, R. Venegopal, C. Barillot, A. Evans.
Automated extraction and variability analysis of sulcal neuroanatomy, in: IEEE Transactions on Medical Imaging, 1999, vol. 18, no 3, p. 206-217.
S. Prima, S. Ourselin, N. Ayache.
Computation of the mid-sagittal plane in 3D brain images, in: IEEE Transactions on Medical Imaging, 2002, vol. 21, no 2, p. 122-138.
R. Robb, C. Barillot.
Interactive Display and Analysis of 3-D Medical Images, in: IEEE Transactions on Medical Imaging, 1989, vol. 8, no 3, p. 217-226.

Publications of the year

Doctoral Dissertations and Habilitation Theses

A. Mechouche.
Représentation et partage de connaissances en neuroanatomie : application à l'annotation sémantique des images IRM du cerveau, Université Rennes I, April 2009, Ph. D. Thesis.
N. Wiest-Daesslé.
Imagerie du tenseur de diffusion pour l'étude de pathologies cérébrales, Université Rennes I, January 2009, Ph. D. Thesis.

Articles in International Peer-Reviewed Journal

J.-B. Baugros, C. Cren-Olivé, B. Giroud, J.-Y. Gauvrit, P. Lantéri, M.-F. Grenier-Loustalot.
Optimisation of pressurised liquid extraction by experimental design for quantification of pesticides and alkyl phenols in sludge, suspended materials and atmospheric fallout by liquid chromatography-tandem mass spectrometry, in: J Chromatogr A, June 2009, vol. 1216, no 25, p. 4941–9.
M. Chakravarty, A. Sadikot, J. Germann, P. Hellier, G. Bertrand, D. L. Collins.
Comparison of piece-wise linear, linear, and nonlinear atlas-to-patient warping techniques: analysis of the labeling of subcortical nuclei for functional neurosurgical applications, in: Human Brain Mapping, 2009, vol. in press.
C. Ciofolo, C. Barillot.
Atlas-based segmentation of 3D cerebral structures with competitive level sets and fuzzy control, in: Medical Image Analysis, 2009, vol. 13, no 3, p. 456–470.
P. Coupé, P. Hellier, C. Kervrann, C. Barillot.
NonLocal Means-based Speckle Filtering for Ultrasound Images, in: IEEE Transactions on Image Processing, 2009.
P. Dam-Hieu, R. Seizeur, J.-F. Mineo, J.-P. Metges, P. Meriot, H. Simon.
Retrospective study of 19 patients with intramedullary spinal cord metastasis, in: Clin Neurol Neurosurg, January 2009, vol. 111, no 1, p. 10–7.
R. Gérard, E. Stindel, G. Dardenne, J.-J. Jacq, R. Seizeur, B. Sénécail, C. Lefèvre.
Greater trochanter displacements after Charnley's trochanterotomy, during passive hip movements: a real-time 3D cadaveric approach, in: Surg Radiol Anat, March 2009.
C. Haegelen, D. García-Lorenzo, F. Le Jeune, J. Péron, B. Gibaud, L. Riffaud, G. Brassier, C. Barillot, M. Vérin, X. Morandi.
SPECT and PET analysis of subthalamic stimulation in Parkinson's disease: analysis using a manual segmentation, in: J. of Neurology, 2009, IF 2,7.
C. Haegelen, T. Rouaud, P. Darnault, X. Morandi.
The subthalamic nucleus is a key-structure of limbic basal ganglia functions, in: Med Hypotheses, April 2009, vol. 72, no 4, p. 421–6.
P. Hellier, P. Coupé, X. Morandi, D. L. Collins.
An automatic geometrical and statistical method to detect acoustic shadows in intraoperative ultrasound brain images, in: Medical Image Analysis, 2010, (to appear).
A. Klein, J. Andersson, B. Ardekani, J. Ashburner, B. Avants, M. Chiang, G. Christensen, D. L. Collins, J. Gee, P. Hellier, J. Song, M. Jenkinson, C. Lepage, D. Rueckert, P. Thompson, T. Vercauteren, R. Woods, J. J. Mann, R. Parsey.
Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration, in: NeuroImage, 2009, vol. 46, no 3, p. 786–802.
F. Lalys, C. Haegelen, J.-C. Ferré, O. El-Ganaoui, P. Jannin.
Construction and assessment of a 3T MRI brain template, in: Neuroimage, 2009, vol. accepted.
A. Mechouche, X. Morandi, C. Golbreich, B. Gibaud.
A Hybrid System Using Symbolic and Numeric Knowledge for the Semantic Annotation of Sulco-Gyral Anatomy in Brain MRI Images, in: IEEE Transactions on Medical Imaging, August 2009, vol. 28, no 8, p. 1165–1178.
M. Messerer, M. Nouri, S. Diabira, X. Morandi, A. Hamlat.
Hearing loss attributable to a cerebellopontine-angle arachnoid cyst in a child, in: Pediatr Neurosurg, 2009, vol. 45, no 3, p. 214–9.
T. Morineau, X. Morandi, N. Le Moëllic, S. Diabira, L. Riffaud, C. Haegelen, P.-L. Hénaux, P. Jannin.
Decision making during preoperative surgical planning, in: Hum Factors, February 2009, vol. 51, no 1, p. 67–77.
T. Neumuth, P. Jannin, G. Strauss, J. Meixensberger, O. Burgert.
Validation of knowledge acquisition for surgical process models, in: J Am Med Inform Assoc, 2009, vol. 16, no 1, p. 72–80.
P. Paul, X. Morandi, P. Jannin.
A Surface Registration Method for Quantification of Intraoperative Brain Deformations in Image-Guided Neurosurgery, in: IEEE Trans on Information Technology in BioMedicine, 2009, vol. accepted.
M. Petkova, J.-Y. Gauvrit, D. Trystram, F. Nataf, S. Godon-Hardy, T. Munier, Oppenheim, C. Jean-François Meder.
Three-dimensional dynamic time-resolved contrast-enhanced MRA using parallel imaging and a variable rate k-space sampling strategy in intracranial arteriovenous malformations, in: J Magn Reson Imaging, January 2009, vol. 29, no 1, p. 7–12.
M. Ropars, X. Morandi, D. Huten, H. Thomazeau, E. Berton, P. Darnault.
Anatomical study of the lateral femoral cutaneous nerve with special reference to minimally invasive anterior approach for total hip replacement, in: Surg Radiol Anat, March 2009, vol. 31, no 3, p. 199–204.
R. Seizeur, S. Sid Ahmed, A. Simon, G. Besson, P. Forlodou.
Acute non-traumatic spinal subdural haematoma: an unusual aetiology, in: J Clin Neurosci, June 2009, vol. 16, no 6, p. 842–3.
C. A. Taschner, L. Thines, M. El-Mahdy, H. Rachdi, J.-Y. Gauvrit, J.-P. Lejeune, J.-P. Pruvo, X. Leclerc.
GDC 360 degrees for the endovascular treatment of intracranial aneurysms: a matched-pair study analysing angiographic outcomes with GDC 3D Coils in 38 patients, in: Neuroradiology, January 2009, vol. 51, no 1, p. 45–52.

Articles in National Peer-Reviewed Journal

J.-Y. Gauvrit, X. Leclerc, J.-C. Ferré, C.-A. Taschner, B. Carsin-Nicol, E. Auffray-Calvier, X. Morandi, M. Carsin.
[Imaging of subarachnoid hemorrhage], in: J Neuroradiol, May 2009, vol. 36, no 2, p. 65–73.
R. Seizeur, P. Forlodou, I. Quintin-Roue, H. Person, G. Besson.
[Chondrosarcomas of skull base treatment.], in: Rev Neurol (Paris), July 2009.
A. Simon, R. Seizeur, H. Person, P. Forlodou, P. Dam Hieu, G. Besson.
[Anterior lumbar interbody fusion for treatment of failed back surgery syndrome: a retrospective study of 46 cases], in: Neurochirurgie, June 2009, vol. 55, no 3, p. 309–13.

International Peer-Reviewed Conference/Proceedings

B. Combes, S. Prima.
Prior affinity measures on matches for ICP-like nonlinear registration of free-form surfaces, in: 6th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI'2009, Boston, USA, June 2009, p. 370–373.
B. Combes, S. Prima.
Setting priors and enforcing constraints on matches for nonlinear registration of meshes, in: 12th International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI'2009, London, UK, G.-Z. Yang, D. Hawkes, D. Rueckert, J. Noble, C. Taylor (editors), Lecture Notes in Computer Science, Springer, September 2009, p. 175–183.
B. Combes, S. Prima.
A modified ICP algorithm for normal-guided surface registration, in: Proceedings of SPIE Medical Imaging 2010: Image Processing, San Diego, USA, B.-M. Dawant, D. R. Haynor (editors), February 2010, to appear.
M. Descoteaux, N. Wiest-Daesslé, S. Prima, C. Barillot, R. Deriche, J.-F. Mangin, C. Poupon.
NEX or no NEX? A high angular resolution diffusion imaging study, in: ISMRM'09, Honolulu, USA, April 2009.
D. García-Lorenzo, J. Lecoeur, D. Arnold, D. L. Collins, C. Barillot.
Multiple Sclerosis lesion segmentation using an automatic multimodal Graph Cuts, in: Medical Image Computing and Computer Assisted Intervention, MICCAI'09, London, UK, Springer-Verlag, 2009.
F. Lalys, C. Haegelen, A. Abadie, P. Jannin.
Post-operative assessment in Deep Brain Stimulation based on multimodal images: registration workflow and validation, in: Medical Imaging 2009: Visualization, Image-Guided Procedures, and Modeling, Lake Buena Vista, FL, USA, M. Miga, K. Wong (editors), SPIE, February 2009, no 1, p. 0–0.
J. Lecoeur, J.-C. Ferré, C. Barillot.
Optimized supervised segmentation of MS lesions from multispectral MRIs, in: Proceedings of MICCAI workshop on Medical Image Analysis on Multiple Sclerosis (validation and methodological issues), D. L. Collins, C. Barillot (editors), Sept. 2009
J. Lecoeur, J.-C. Ferré, D. L. Collins, S. Morrissey, C. Barillot.
Multi Channel MRI Segmentation With Graph Cuts Using Spectral Gradient And Multidimensional Gaussian Mixture Model, in: Proceedings of SPIE Medical Imaging 2009: Image Processing, Orlando, USA, J.-P. Pluim, B.-M. Dawant (editors), February 2009, vol. 7259.

National Peer-Reviewed Conference/Proceedings

A. Mechouche, X. Morandi, C. Golbreich, B. Gibaud.
Annotation basée ontologie des images IRM du cerveau, in: Atelier ECOI (Extraction de COnnaissances et Image**), dans le cadre de la conférence EGC (Extraction et Gestion de Connaissances), Strasbourg, France, January 2009.
B. Trelhu, F. Lalys, L. Riffaud, X. Morandi, P. Jannin.
Analyse de données pour la construction de modèles de procédures neurochirurgicales, in: Extraction et gestion des connaissances [EGC'2009], 2009, vol. RNTI E-15, p. 427–432.

Books or Proceedings Editing

D. L. Collins, C. Barillot (editors)
International Workshop on Medical Image Analysis on Multiple Sclerosis Multiple Sclerosis (validation and methodological issues), online, 2009.

Other Publications

F. Palhano, G. Andrade, P. Hellier.
FUID (Fast Ultrasound Image Denoising), 2009.

References in notes

C. Baillard, C. Barillot.
Robust 3D Segmentation of Anatomical Structures with Level Sets, in: Medical Image Computing and Computer-Assisted Intervention, Pittsburgh, PA, Lecture Notes in Computer Sciences, Springer-Verlag, 2000, vol. lncs-1935, p. 236-245.
C. Baillard, P. Hellier, C. Barillot.
Segmentation of brain 3D MR images using level sets and dense registration, in: Medical Image Analysis, 2001, vol. 5, no 3, p. 185-194.
C. Barillot.
Fusion de données et imagerie 3D en médecine, Université de Rennes 1, 1999, Ph. D. Thesis.
I. Corouge, C. Barillot.
Use of a probabilistic shape model for non-linear registration of 3D scattered data, in: IEEE Int. Conf. on Image Processing, ICIP'2001, Thessaloniki, Greece, IEEE Press, 2001, p. 149-152.
I. Corouge, M. Dojat, C. Barillot.
Statistical shape modeling of low level visual area borders, in: Medical Image Analysis, 2004, vol. 8, no 3, p. 353-360
I. Corouge, P. Hellier, B. Gibaud, C. Barillot.
Inter-individual functional mapping: a non linear local approach, in: Neuroimage, 2003, vol. 19, no 4, p. 1337–1348
C. Grova, P. Jannin, I. Buvat, H. Benali, B. Gibaud.
Evaluation of Registration of Ictal SPECT/MRI Data Using Statistical Similarity Methods, in: Medical Image Computing and Computer-Assisted Intervention – MICCAI 2004, 7th International Conference Saint-Malo, France, September 26-29, 2004, Proceedings, Part I, C. Barillot, D. R. Haynor, P. Hellier (editors), Lecture Notes in Computer Science, Springer, 2004, vol. 3216, p. 687-695.
P. Hellier, J. Ashburner, I. Corouge, C. Barillot, K. Friston.
Inter subject registration of functional and anatomical data using SPM, in: Medical Image Computing and Computer-Assisted Intervention - MICCAI 2002, Tokyo, R. Kikinis, R. Ellis, T. Dohi (editors), Lecture Notes in Computer Sciences, Springer-Verlag, 2002, vol. LNCS-2489, p. 590-587.
P. Hellier, C. Barillot, I. Corouge, B. Gibaud, G. Le Goualher, D. L. Collins, A. Evans, G. Malandain, N. Ayache, G. Christensen, H. Johnson.
Retrospective Evaluation of Intersubject Brain Registration, in: IEEE Transactions on Medical Imaging, 2003, vol. 22, no 9, p. 1120-1130.
P. Jannin, C. Grova, C. Maurer.
Model for defining and reporting reference-based validation protocols in medical image processing, in: International Journal of Computer Assisted Radiology and ..., 2006, vol. 1, no 2, p. 1001-1015.
P. Jannin, E. Krupinski, S. Warfield.
Validation in medical image processing, in: IEEE Trans Med Imaging, 2006, vol. 25, no 11, p. 1405-9, Jannin, Pierre Krupinski, Elizabeth Warfield, Simon Editorial United States IEEE transactions on medical imaging IEEE Trans Med Imaging. 2006 Nov;25(11):1405-9..
P. Jannin, X. Morandi.
Surgical models for computer-assisted neurosurgery, in: Neuroimage, 2007, vol. 37, no 3, p. 783-91, Jannin, P Morandi, X United States NeuroImage Neuroimage. 2007 Sep 1;37(3):783-91. Epub 2007 May 31..
P. Jannin, M. Raimbault, X. Morandi, L. Riffaud, B. Gibaud.
Model of surgical procedures for multimodal image-guided neurosurgery, in: Comput Aided Surg, 2003, vol. 8, no 2, p. 98-106, Jannin, P Raimbault, M Morandi, X Riffaud, L Gibaud, B Research Support, Non-U.S. Gov't Validation Studies United States Computer aided surgery : official journal of the International Society for Computer Aided Surgery Comput Aided Surg. 2003;8(2):98-106..
P. Paul, O. Fleig, P. Jannin.
Augmented Virtuality Based on Stereoscopic Reconstruction in Multimodal Image-Guided Neurosurgery: Methods and Performance Evaluation, in: IEEE Transactions on Medical Imaging, 2005, vol. 24, no 11, 1500 p, 0278-0062.
J. West, J. Fitzpatrick, M. Wang, B. Dawant, C. Maurer, R. Kessler, R. Maciunas, C. Barillot, D. Lemoine, A. Collignon, F. Maes, P. Suetens, D. Vandermeulen, P. van den Elsen, S. Napel, T. Sumanaweera, B. Harkness, P. Hemler, D. Hill, D. Hawkes, C. Studholme, J. Maintz, M. Viergever, G. Malandain, X. Pennec, M. Noz, G. Maguire, M. Pollack, C. Pellizzari, R. Robb, D. Hanson, R. Woods.
Comparison and Evaluation of Retrospective Intermodality Brain Image Registration Techniques, in: J. Computer Assisted Tomography, 1997, vol. 21, p. 554-566.