Inria / Raweb 2009
Presentation of the Project parietal

Bibliography

Major publications by the team in recent years

[1]: S. Durrleman, P. Fillard, X. Pennec, A. Trouvé, N. Ayache.
A statistical model of white matter fiber bundles based on currents., in: Inf Process Med Imaging, 2009, vol. 21, p. 114–125.
[2]: P. Fillard, C. Poupon, J.-F. Mangin.
A Novel Global Tractography Framework based on an Adaptive Spin Glass Model, in: Proc. 12th MICCAI, 2009
ftp://ftp.cea.fr/pub/dsv/anatomist/papers/Fillard-MICCAI09.pdf.
[3]: A. Knops, B. Thirion, E. Hubbard, V. Michel, S. Dehaene.
Recruitment of an area involved in eye movements during mental arithmetic., in: Science, Jun 2009, vol. 324, n^o 5934, p. 1583–1585.
[4]: B. Thirion, E. Duchesnay, E. Hubbard, J. Dubois, J.-B. Poline, D. Le Bihan, S. Dehaene.
Inverse retinotopy: inferring the visual content of images from brain activation patterns., in: Neuroimage, Dec 2006, vol. 33, n^o 4, p. 1104–1116
http://dx.doi.org/10.1016/j.neuroimage.2006.06.062.
[5]: B. Thirion, P. Pinel, S. Mériaux, A. Roche, S. Dehaene, J.-B. Poline.
Analysis of a Large fMRI cohort: Statistical and Methodological Issues for Group Analyses, in: NeuroImage, 2007, vol. 35, n^o 1, p. 105–120.
[6]: B. Thirion, P. Pinel, A. Tucholka, A. Roche, P. Ciuciu, J.-F. Mangin, J.-B. Poline.
Structural Analysis of fMRI Data Revisited: Improving the Sensitivity and Reliability of fMRI Group Studies, in: IEEE Trans. Med. Imag., September 2007, vol. 26, n^o 9, p. 1256–1269.
[7]: B. Thirion, A. Tucholka, M. Keller, P. Pinel, A. Roche, J.-F. Mangin, J.-B. Poline.
High level group analysis of FMRI data based on Dirichlet process mixture models, in: Inf Process Med Imaging, 2007, vol. 20, p. 482–494.
[8]: A. Tucholka, B. Thirion, M. Perrot, P. Pinel, J.-F. Mangin, J.-B. Poline.
Probabilistic anatomo-functional parcellation of the cortex: how many regions?, in: 11thProc. MICCAI, LNCS Springer Verlag, New-York, USA, 2008.

Publications of the year

Doctoral Dissertations and Habilitation Theses

[9]: B. Thirion.
Structural and probabilistic methods for group analysis in functional neuroimaging, Ecole Normale Supérieure de Cachan, 2009
http://tel.archives-ouvertes.fr/docs/00/43/82/02/PDF/HDR.pdf, Habilitation à Diriger des Recherches.

Articles in International Peer-Reviewed Journal

[10]: E. Eger, V. Michel, B. Thirion, A. Amadon, S. Dehaene, A. Kleinschmidt.
Deciphering cortical number coding from human brain activity patterns., in: Curr Biol, Oct 2009, vol. 19, n^o 19, p. 1608–1615.
[11]: A. Knops, B. Thirion, E. Hubbard, V. Michel, S. Dehaene.
Recruitment of an area involved in eye movements during mental arithmetic., in: Science, Jun 2009, vol. 324, n^o 5934, p. 1583–1585.
[12]: M. Lebreton, S. Jorge, V. Michel, B. Thirion, M. Pessiglione.
An automatic valuation system in the human brain: evidence from functional neuroimaging., in: Neuron, Nov 2009, vol. 64, n^o 3, p. 431–439.
[13]: C. R. Pernet, J.-B. Poline, J. F. Demonet, G. A. Rousselet.
Brain classification reveals the right cerebellum as the best biomarker of dyslexia., in: BMC Neurosci, 2009, vol. 10, 67 p
http://dx.doi.org/10.1186/1471-2202-10-67, ACL.
[14]: E. Rusconi, P. Pinel, S. Dehaene, A. Kleinschmidt.
The enigma of Gerstmann's syndrome revisited: a telling tale of the vicissitudes of neuropsychology., in: Brain, Nov 2009.
[15]: G. Varoquaux, S. Sadaghiani, J.-B. Poline, B. Thirion.
Model-based extraction of resting-state networks across subjects, in: Neuroimage, 2009, vol. 47, p. 82–82.
[16]: T. Vercauteren, P. Fillard, X. Pennec, P. Golland, N. Ayache, O. Clatz.
DT-REFinD: Diffusion Tensor Registration With Exact Finite-Strain Differential., in: IEEE Trans Med Imaging, Jun 2009.

Articles in National Peer-Reviewed Journal

[17]: G. Varoquaux.
Python comme language scientifique, in: Linux Mag Hor Série, 01 2009, vol. 40
http://gael-varoquaux.info/blog/wp-content/uploads/2009/07/article_python_scientifique.pdf.

International Peer-Reviewed Conference/Proceedings

[18]: G. Cecchi, I. Rish, B. Thyreau, B. Thirion, M. Plaze, J.-L. Martinot, M. L. Paillere-Martinot, J.-B. Poline.
Predictive Network Models of Schizophrenia, in: Neural Information Processing Systems Conference, 2009, – p, ACTI.
[19]: S. Durrleman, P. Fillard, X. Pennec, A. Trouvé, N. Ayache.
A statistical model of white matter fiber bundles based on currents., in: Inf Process Med Imaging, 2009, vol. 21, p. 114–125.
[20]: P. Fillard, C. Poupon, J.-F. Mangin.
A Novel Global Tractography Framework based on an Adaptive Spin Glass Model, in: Proc. 12th MICCAI, 2009
ftp://ftp.cea.fr/pub/dsv/anatomist/papers/Fillard-MICCAI09.pdf.
[21]: M. Keller, M. Lavielle, M. Perrot, A. Roche.
Anatomically Informed Bayesian Model Selection for fMRI Group Data Analysis, in: MICCAI 2009, Part II, LNCS 5762, Springer-Verlag, London, U.K., September 2009.
[22]: M. Perrot, D. Rivière, A. Tucholka, J.-F. Mangin.
Joint Bayesian Cortical Sulci Recognition and Spatial Normalization, in: Proc. 21th IPMI, Williamsburg, VA, LNCS-5636, Springer Verlag, July 2009, p. 176–187
ftp://ftp.cea.fr/pub/dsv/anatomist/papers/Perrot-IPMI09.pdf.

Workshops without Proceedings

[23]: L. Favre, A.-L. Fouque, T. Vincent, A. Tucholka, M. Keller, G. Operto, B. Thyreau, C. Clouchoux, L. Risser, A. Moreno, D. Geffroy, Y. Cointepas, O. Coulon, P. Ciuciu, B. Thirion, A. Roche.
A Comprehensive fMRI Processing Toolbox for BrainVISA, in: Hum. Brain Mapp., 2009.
[24]: P. Guevara, Y. Cointepas, D. Rivière, C. Poupon, B. Thirion, J.-F. Mangin.
Inference of a fiber bundle atlas using a two-level clustering strategy, in: MICCAI 2009 Workshop on Diffusion Modelling, 2009.
[25]: V. Michel, E. Eger, C. Keribin, B. Thirion.
Adaptive multi-class Bayesian sparse regression - An application to brain activity classification, in: MICCAI'09 Workshop on Analysis of Functional Medical Images., september 2009.
[26]: Z. Y. Sun, M. Perrot, A. Tucholka, D. Rivière, J.-F. Mangin.
Constructing a Dictionary of Human Brain Folding Patterns, in: MICCAI 2009, Part II, LNCS 5762, Springer-Verlag, 2009, p. 117–124
ftp://ftp.cea.fr/pub/dsv/anatomist/papers/Sun-MICCAI09.pdf.
[27]: A. Tucholka, M. Keller, J.-B. Poline, A. Roche, B. Thirion.
Surface-based versus volume-based fMRI group analysis: a case study, in: In Medical Image Computing and Computer-Assisted Intervention - MICCAI'09, Workshop fMRI Statistical Analysis, 2009.
[28]: G. Varoquaux, S. Sadaghiani, J.-B. Poline, B. Thirion.
CanICA: Model-based extraction of reproducible group-level ICA patterns from fMRI time series, in: MICCAI 2009: fMRI data analysis workshop Medical Image Computing and Computer Aided Intervention, London United Kingdom, 09 2009, 1 p
http://hal.archives-ouvertes.fr/hal-00435262/en/.

Scientific Books (or Scientific Book chapters)

[29]: J.-B. Poline, L. Garnero, P. Lahaye.
Combining neuroimaging technique, Oxford University Press, 2009, OS.
[30]: J.-B. Poline, B. Thirion, A. Roche, S. Mériaux.
Inter subject variability in fMRI data: causes, consequences, and related analysis strategies, MIT press, 2009, OS.

Books or Proceedings Editing

[31]: G. Varoquaux, S. van der Walt, J. Millman (editors)
SciPy 2009: Proceedings of the 8th Python in Science conference, SciPy, CalTech, Passadena, 08 2009.

References in notes

[32]: J.-F. Mangin, C. Poupon, Y. Cointepas, D. Rivière, D. Papadopoulos-Orfanos, C. A. Clark, J. Régis, D. Le Bihan.
A framework based on spin glass models for the inference of anatomi cal connectivity from diffusion-weighted MR data, in: NMR in Biomedicine, 2002, vol. 15, p. 481–492
http://brainvisa.info/pdf/mangin-NMRbiomed02.pdf.

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