Inria / Raweb 2009
Presentation of the Project Orpailleur

Bibliography

Major publications by the team in recent years

[1]: Y. Asses, V. Leroux, S. Tairi-Kellou, R. Dono, F. Maina, B. Maigret.
Analysis of c-Met Kinase Domain Complexes: A New Specific Catalytic Site Receptor Model for Defining Binding Modes of ATP-Competitive Ligands, in: Chemical Biology & Drug Design, 2009, vol. 74, p. 560-570
http://hal.inria.fr/inria-00435159/en/.
[2]: F. Badra, A. Cordier, J. Lieber.
Opportunistic Adaptation Knowledge Discovery, in: 8th International Conference on Case-Based Reasoning, ICCBR 2009 ICCBR, Seattle États-Unis d'Amérique, L. McGinty, D. C. Wilson (editors), Lecture Notes in Computer Science, Springer, 07 2009, vol. 5650, p. 60-74
http://hal.inria.fr/inria-00437693/en/.
[3]: A. Carrieri, V. Pérez-Nueno, A. Fano, C. Pistone, D. W. Ritchie, J. Teixidó.
Biological Profiling of Anti-HIV Agents and Insight into CCR5 Antagonist Binding Using in silico Techniques, in: ChemMedChem, 2009, vol. 4, p. 1153–1163
http://dx.doi.org/10.1002/cmdc.200900101.
[4]: J. Cojan, J. Lieber.
Belief Merging-based Case Combination, in: 8th International Conference on Case-Based Reasoning - ICCBR 2009 Case-Based Reasoning Research and Development, Seattle États-Unis d'Amérique, D. C. Wilson, L. McGinty (editors), Lecture Notes in Computer Science, Springer Berlin, 07 2009, vol. 5650, p. 105-119
http://hal.inria.fr/inria-00421724/en/, The original publication is available at www.springerlink.com.
[5]: C. Eng, C. Asthana, B. Aigle, S. Hergalant, J.-F. Mari, P. Leblond.
A new data mining approach for the detection of bacterial promoters combining stochastic and combinatorial methods, in: Journal of Computational Biology, 09 2009, vol. 16, p. 1211-1225
http://hal.inria.fr/inria-00419969/en/, J.: Computer Applications/J.3: LIFE AND MEDICAL SCIENCES/J.3.0: Biology and genetics Région Lorraine, CPER-MBI.
[6]: M. Kaytoue-Uberall, S. Duplessis, S. Kuznetsov, A. Napoli.
Two FCA-Based Methods for Mining Gene Expression Data, in: Formal Concept Analysis – Proceedings of the 7th International Conference – ICFCA 2009, Darmstadt, Germany, S. Ferré, S. Rudolf (editors), Lecture Notes in Artificial Intelligence 5548, Springer, Berlin, 2009, p. 251–266.
[7]: F. Le Ber, C. Lavigne, K. Adamczyk, F. Angevin, N. Colbach, J.-F. Mari, H. Monod.
Neutral modelling of agricultural landscapes by tessellation methods – Application for gene flow simulation, in: Ecological Modelling, 2009, vol. 220, p. 3536–3545.
[8]: E. Nauer, Y. Toussaint.
CreChainDo: an iterative and interactive Web information retrieval system based on lattices, in: International Journal of General Systems, 2009, vol. 38, p. 363-378
http://hal.archives-ouvertes.fr/inria-00336845/en/.
[9]: F. Pennerath, A. Napoli.
The Model of Most Informative Patterns and its Application to Knowledge Extraction from Graph Databases, in: European Conference on Machine Learning and Principles and Practice of Knowledge Discovery in Databases, ECML/PKDD 2009, Bled, Slovenia, W. Buntime, M. Grobelnik, J. Shawe-Taylor, D. Mladenic (editors), Lecture Notes in Artificial Intelligence 5782, Springer, Berlin, 2009, p. 205-220.
[10]: L. Szathmary, P. Valtchev, A. Napoli, R. Godin.
Efficient Vertical Mining of Frequent Closures and Generators, in: Proceedings of the 8th International Symposium on Intelligent Data Analysis (IDA-2009), Lyon, France, N. Adams, J.-F. Boulicaut, C. Robardet, A. Siebes (editors), Lecture Notes in Computer Science 5772, Springer, Berlin, 2009, p. 393–404.
[11]: S. Yilmaz, P. Jonveaux, C. Bicep, L. Pierron, M. Smail-Tabbone, M.-D. Devignes.
Gene-Disease Relationship Discovery based on Model-driven Data Integration and Database View Definition, in: Bioinformatics, 2009, vol. 25, p. 230–236.

Publications of the year

Doctoral Dissertations and Habilitation Theses

[12]: F. Badra.
Extraction de connaissances d'adaptation en raisonnement à partir de cas, Université Henri Poincaré - Nancy I, 11 2009
http://tel.archives-ouvertes.fr/tel-00438140/en/, Ph. D. Thesis.
[13]: R. Bendaoud.
Analyses formelle et relationnelle de concepts pour la construction d'ontologies de domaines à partir de ressources textuelles hétérogènes, Université Henri Poincaré - Nancy I, 2009, Ph. D. Thesis.
[14]: N. Messai.
Extraction de connaissances et Web sémantique. Application à la recherche et l'intégration de ressources génomiques sur le Web, University Henri Poincaré – Nancy 1, France, March 2009, Thèse d'Université en informatique.
[15]: F. Pennerath.
Méthodes d'extraction de connaissances à partir de données modélisables par des graphes. Application à des problèmes de synthèse organique, Université Henri Poincaré Nancy 1, 2009, Thèse d'informatique.

Articles in International Peer-Reviewed Journal

[16]: Y. Asses, V. Leroux, S. Tairi-Kellou, R. Dono, F. Maina, B. Maigret.
Analysis of c-Met Kinase Domain Complexes: A New Specific Catalytic Site Receptor Model for Defining Binding Modes of ATP-Competitive Ligands, in: Chemical Biology & Drug Design, 2009, vol. 74, p. 560-570
http://hal.inria.fr/inria-00435159/en/.
[17]: A. Carrieri, V. Pérez-Nueno, A. Fano, C. Pistone, D. W. Ritchie, J. Teixidó.
Biological Profiling of Anti-HIV Agents and Insight into CCR5 Antagonist Binding Using in silico Techniques, in: ChemMedChem, 2009, vol. 4, p. 1153–1163
http://dx.doi.org/10.1002/cmdc.200900101.
[18]: C. Claperon, I. Banegas-Font, X. Iturrioz, R. Rozenfeld, B. Maigret, C. Llorens-Cortes.
Identification of threonine 348 as a residue involved in aminopeptidase A substrate specificity, in: The Journal of Biological Chemistry, 2009, vol. 284, n^o 16, p. 10618-26
http://www.hal.inserm.fr/inserm-00418798/en/.
[19]: N. Déliot, M. Chavent, C. Nourry, P. LÉcine, C. Arnaud, A. Hermant, B. Maigret, J. Borg.
Biochemical studies and Molecular Dynamics Simulations of Smad3-Erbin interaction identify a non-classical Erbin PDZ binding, in: Biochemical and Biophysical Research Communications / Biochemistry and Biophysics Research Communications, 2009, vol. 378, p. 360-365
http://hal.inria.fr/inria-00339128/en/.
[20]: E. De Oliveira, C. Humeau, L. Chebil, E. Maia, F. Dehez, B. Maigret, M. Ghoul, J. Engasser.
A molecular modelling study to rationalize the regioselectivity in acylation of flavonoïd glycosides catalysed by Candida antartica lipase B, in: Journal of Molecular Catalysis B: Enzymatic, 2009, vol. 59, p. 96-105
http://hal.inria.fr/inria-00435075/en/.
[21]: C. Eng, C. Asthana, B. Aigle, S. Hergalant, J.-F. Mari, P. Leblond.
A new data mining approach for the detection of bacterial promoters combining stochastic and combinatorial methods, in: Journal of Computational Biology, 09 2009, vol. 16, p. 1211-1225
http://hal.inria.fr/inria-00419969/en/, J.: Computer Applications/J.3: LIFE AND MEDICAL SCIENCES/J.3.0: Biology and genetics Région Lorraine, CPER-MBI.
[22]: S. Ferraresso, H. Kuhl, M. Milan, D. W. Ritchie, C. J. Secombes, R. Reinhardt, L. Bargelloni.
Identification and characterisation of a novel immune-type receptor (NITR) gene cluster in the European sea bass, Dicentrarchus labrax, reveals recurrent gene expansion and diversification by positive selection, in: Immunogenetics, 2009
http://dx.doi.org/10.1007/s00251-009-0398-3, To Appear.
[23]: N. Floquet, P. Durand, B. Maigret, B. Badet, M.-A. Badet-Denisot, D. Perahia.
Collective motions in glucosamine-6-phosphate synthase: influence of ligand binding and role in ammonia channelling and opening of the fructose-6-phosphate binding site, in: Journal of Molecular Biology, 2009, vol. 385, n^o 2, p. 653-64
http://hal.archives-ouvertes.fr/hal-00365799/en/.
[24]: A. Khalfa, W. Treptow, B. Maigret, M. Tarek.
Self assembly of peptides near or within membranes using coarse grained MD simulations, in: Chemical Physics, 2009, vol. 358, p. 161-170
http://hal.inria.fr/inria-00435164/en/.
[25]: E. G. Lazrak, J.-F. Mari, B. Marc.
Landscape regularity modelling for environmental challenges in agriculture, in: Landscape Ecology, 09 2009
http://hal.inria.fr/inria-00419952/en/.
[26]: F. Le Ber, C. Lavigne, K. Adamczyk, F. Angevin, N. Colbach, J.-F. Mari, H. Monod.
Neutral modelling of agricultural landscapes by tessellation methods – Application for gene flow simulation, in: Ecological Modelling, 2009, vol. 220, p. 3536–3545.
[27]: I. Lemonnier, C. Baumann, N. Jay, K. Alzahouri, P. Arveux, D. Jolly, C. Lejeune, M. Velten, F. Vitry, M.-C. Woronoff-Lemsi, F. Guillemin.
Does the availability of positron emission tomography modify diagnostic strategies for solitary pulmonary nodules? An observational study in France, in: BMC Cancer, 2009, vol. 9, 139 p
http://dx.doi.org/10.1186/1471-2407-9-139.
[28]: L. Mavridis, D. W. Ritchie.
3D-Blast: Protein Protein Structure Alignment, Comparison, and Classification Using Spherical Polar Fourier Correlations, in: Pacific Symposium on Biocomputing, 2009, vol. 2010, p. 281–292
http://dx.doi.org/10.1142/9789814295291_0030.
[29]: E. Nauer, Y. Toussaint.
CreChainDo: an iterative and interactive Web information retrieval system based on lattices, in: International Journal of General Systems, 2009, vol. 38, p. 363-378
http://hal.archives-ouvertes.fr/inria-00336845/en/.
[30]: F. Pennerath, A. Napoli.
La famille des motifs les plus informatifs. Application à l'extraction de graphes en chimie organique, in: Revue I3, 2009, vol. 8, n^o 2.
[31]: V. Pérez-Nueno, S. Pettersson, D. W. Ritchie, J. I. Borrell, J. Teixidó.
Discovery of Novel HIV Entry Inhibitors for the CXCR4 Receptor by Prospective Virtual Screening, in: Journal of Chemical Information and Modeling, 2009, vol. 49, p. 810–823
http://dx.doi.org/10.1021/ci800468q.
[32]: S. Yilmaz, P. Jonveaux, C. Bicep, L. Pierron, M. Smail-Tabbone, M.-D. Devignes.
Gene-Disease Relationship Discovery based on Model-driven Data Integration and Database View Definition, in: Bioinformatics, 2009, vol. 25, p. 230–236.

International Peer-Reviewed Conference/Proceedings

[33]: Z. Assaghir, M. Kaytoue, N. Messai, A. Napoli.
On the mining of numerical data with Formal Concept Analysis and similarity, in: Book of Short Papers – Meeting of CLADAG, Catania (Italy), S. Ingrassia (editor), Edizione Scientifiche Italiane, Napoli, 2009, – p, Also presented at Journées SFC, Grenoble septembre 2009.
[34]: H. Astudillo, G. Canals, A. Diaz, A. Napoli, M. Pimentel.
From data to knowledge through collaboration: bridging Wikis and Knowledge Systems, in: COLIBRI 2009. Colloque d'informatique Brésil/Inria, Bento Gonçalves, Brésil, Universidade Federal Rio Grande do Sul, Porto Alegre, 2009, p. 211–217
http://hal.inria.fr/inria-00434397/en/.
[35]: F. Badra, J. Cojan, A. Cordier, J. Lieber, T. Meilender, A. Mille, P. Molli, E. Nauer, A. Napoli, H. Skaf-Molli, Y. Toussaint.
Knowledge acquisition and discovery for the textual case-based cooking system WIKITAAABLE, in: 8th International Conference on Case-Based Reasoning - ICCBR 2009, Workshop Proceedings, Seattle États-Unis d'Amérique, S. J. Delany (editor), 07 2009, p. 249–258
http://hal.inria.fr/inria-00411508/en/.
[36]: F. Badra, A. Cordier, J. Lieber.
Opportunistic Adaptation Knowledge Discovery, in: 8th International Conference on Case-Based Reasoning, ICCBR 2009 ICCBR, Seattle États-Unis d'Amérique, L. McGinty, D. C. Wilson (editors), Lecture Notes in Computer Science, Springer, 07 2009, vol. 5650, p. 60-74
http://hal.inria.fr/inria-00437693/en/.
[37]: A. Bertaux, F. Le Ber, A. Braud, M. Trémolières.
Identifying ecological traits: a concrete FCA-based approach, in: 7th International Conference on Formal Concept Analysis, ICFCA 2009, Darmstadt, S. Ferré, S. Rudolph (editors), LNAI 5548, Springer-Verlag, 2009, p. 224–236.
[38]: A. Braud, C. Grac, S. Pristavu, E. Dor, F. Le Ber.
Une démarche fondée sur les treillis de Galois pour l'aide à la qualification de l'état des milieux aquatiques, in: Actes du 2ème Atelier « Systèmes d'Information et de Décision pour l'Environnement » – SIDE 2009, Toulouse, 26 mai 2009, 2009, p. 94–105.
[39]: J. Cojan, J. Lieber.
Belief Merging-based Case Combination, in: 8th International Conference on Case-Based Reasoning - ICCBR 2009 Case-Based Reasoning Research and Development, Seattle États-Unis d'Amérique, D. C. Wilson, L. McGinty (editors), Lecture Notes in Computer Science, Springer Berlin, 07 2009, vol. 5650, p. 105–119
http://hal.inria.fr/inria-00421724/en/, The original publication is available at www.springerlink.com.
[40]: A. Cordier, J. Lieber, P. Molli, E. Nauer, H. Skaf-Molli, Y. Toussaint.
WIKITAAABLE: A semantic wiki as a blackboard for a textual case-based reasoning system, in: SemWiki 2009 - 4rd Semantic Wiki Workshop at the 6th European Semantic Web Conference - ESWC 2009, Heraklion Grèce, 05 2009
http://hal.inria.fr/inria-00432353/en/.
[41]: L. Ghemtio, M. Smail-Tabbone, M.-D. Devignes, M. Souchet, B. Maigret.
A KDD Approach for Designing Filtering Strategies to Improve Virtual Screening, in: KDIR - International Conference on Knowledge Discovery and Information Retrieval, Madeira Portugal, A. Fred (editor), INSTIC, 2009
http://hal.inria.fr/inria-00433475/en/.
[42]: M. Kaytoue-Uberall, S. Duplessis, S. Kuznetsov, A. Napoli.
Two FCA-Based Methods for Mining Gene Expression Data, in: Formal Concept Analysis – Proceedings of the 7th International Conference – ICFCA 2009, Darmstadt, Germany, S. Ferré, S. Rudolf (editors), Lecture Notes in Artificial Intelligence 5548, Springer, Berlin, 2009, p. 251–266.
[43]: F. Pennerath, A. Napoli.
The Model of Most Informative Patterns and its Application to Knowledge Extraction from Graph Databases, in: European Conference on Machine Learning and Principles and Practice of Knowledge Discovery in Databases, ECML/PKDD 2009, Bled, Slovenia, W. Buntime, M. Grobelnik, J. Shawe-Taylor, D. Mladenic (editors), Lecture Notes in Artificial Intelligence 5782, Springer, Berlin, 2009, p. 205-220.
[44]: M. Rouane Hacene, Y. Toussaint, P. Valtchev.
Mining Safety Signals in Spontaneous Report Database using Concept Analysis, in: 12th Conference on Artificial Intelligence in Medicine, AIME 2009, Verona Italie, A. A.-H. Carlo Combi (editor), Springer Berlin / Heidelberg, 07 2009, p. 285-294
http://hal.archives-ouvertes.fr/inria-00437224/en/.
[45]: L. Szathmary, P. Valtchev, A. Napoli, R. Godin.
Efficient Vertical Mining of Frequent Closures and Generators, in: Proceedings of the 8th International Symposium on Intelligent Data Analysis (IDA-2009), Lyon, France, N. Adams, J.-F. Boulicaut, C. Robardet, A. Siebes (editors), Lecture Notes in Computer Science 5772, Springer, Berlin, 2009, p. 393–404.

National Peer-Reviewed Conference/Proceedings

[46]: F. Badra, A. Cordier, J. Lieber.
Découverte opportuniste de connaissances d'adaptation, in: 17ème atelier sur le raisonnement à partir de cas - RàPC-09, Paris France, B. Fuchs, A. Napoli (editors), 06 2009, p. 23–34
http://hal.inria.fr/inria-00411509/en/.
[47]: S. Benabderrahmane, M.-D. Devignes, M. Smaïl-Tabbone, O. Poch, A. Napoli, N. Nguyen N.-H, W. Raffelsberger.
Analyse de données transcriptomiques: Modélisation floue de profils d'expression différentielle et analyse fonctionnelle, in: Actes du XXVIIième congrès Informatique des Organisations et Systèmes d'information et de décision - INFORSID 2009, Toulouse France, IRIT-Toulouse, 2009, p. 413-428
http://hal.inria.fr/inria-00394530/en/.
[48]: A. Bertaux, F. Le Ber, A. Braud.
Correspondances de Galois pour la manipulation de contextes flous multi-valués, in: Extraction et Gestion de Connaissances, EGC'2009, Strasbourg, J.-G. Ganascia, P. Gançarski (editors), RNTI E-15, Cépaduès, 2009, p. 193–198.
[49]: A. Bertaux, F. Le Ber, P. Li, M. Trémolières.
Combiner treillis de Galois et analyse factorielle multiple pour l'analyse de traits biologiques, in: Actes des XVIèmes Rencontres de la Société Francophone de Classification, Grenoble, G. d'Aubigny (editor), septembre 2009, p. 117–120.
[50]: A. Cordier, J. Lieber, P. Molli, E. Nauer, H. Skaf-Molli, Y. Toussaint.
WikiTaaable, un wiki sémantique utilisé comme un tableau noir dans un système de raisonnement à partir de cas textuel, in: 17ème atelier de Raisonnement à Partir de Cas, Paris France, B. Fuchs, A. Napoli (editors), 06 2009
http://hal.archives-ouvertes.fr/inria-00437399/en/.
[51]: A. Cordier, J. Lieber, E. Nauer, Y. Toussaint.
Taaable : système de recherche et de création, par adaptation, de recettes de cuisine, in: Extraction et gestion des connaissances - EGC-2009, Strasbourg France, 2009, p. 479-481
http://hal.inria.fr/inria-00436670/en/.
[52]: B. Fuchs, A. Napoli.
Éléments de réflexion sur les composants d'ontologies et leur manipulation par RàPC, in: Actes du 17ième séminaire sur le raisonnement à partir de Cas, Paris, B. Fuchs, A. Napoli (editors), LORIA, Nancy, 2009, p. 107–113.
[53]: N. Jay, F. Kohler.
Comment évaluer la qualité des données de bases régionales ou nationales des RSA en vue d'une utilisation épidémiologique à partir de l'analyse formelle de concept et des treillis de Galois, in: Actes des XXII journées EMOIS, 2009.
[54]: M. Kaytoue, S. Duplessis, A. Napoli.
L'analyse formelle de concepts pour l'extraction de connaissances dans les données d'expression de gènes, in: Extraction et gestion des connaissances (EGC 2009), Strasbourg, J.-G. Ganascia, P. Gançarski (editors), Revue des Nouvelles Technologies de l'Information, Cépaduès-Éditions, 2009, vol. RNTI-E-15, p. 439–440.
[55]: F. Le Ber, J. Lieber, A. Napoli.
Utilisation d'une algèbre temporelle pour la représentation et l'adaptation de recettes de cuisine, in: 17ème Séminaire Raisonnement à partir de Cas, Paris France, 2009, p. 141-149
http://hal.archives-ouvertes.fr/hal-00409087/en/.
[56]: J. Lieber.
Le moteur de raisonnement à partir de cas de WikiTaaable, in: 17ème atelier sur le raisonnement à partir de cas - RàPC-09, Paris France, B. Fuchs, A. Napoli (editors), 06 2009
http://hal.archives-ouvertes.fr/inria-00437337/en/.

Workshops without Proceedings

[57]: F. Angevin, E. Klein, J.-F. Mari, F. Le Ber, K. Adamczyk, H. Monod, C. Lavigne.
Relative impacts of closest fields and background pollen on GM adventitious presence rates in non-GM harvests, in: Genetically Modified Crops Coexistence Conference (GMCC'09), Melbourne, Australia, 2009, p. 1–7, articles en ligne.
[58]: Z. Assaghir, P. Girardin, A. Napoli.
Fuzzy logic approach to represent and propagate imprecision in agri-environmental indicator assessment, in: IFSA EUSFLAT World Congress 2009, Lisbon, Portugal, 2009.
[59]: J. Cojan, J. Lieber.
Une approche de l'adaptation en raisonnement à partir de cas fondée sur l'optimisation sous contraintes, in: Journées d'Intelligence Artificielle Fondamentale, Marseille France, L. Cholvy, S. Konieczny (editors), 10 2009
http://hal.inria.fr/inria-00425030/en/.
[60]: M. Kaytoue, A. Napoli.
Classification de données numériques par treillis de concepts et structures de patrons, in: Journées d'Intelligence Artificielle Fondamentale – IAF 2009, Marseille, France, L. Cholvy, S. Konieczny (editors), 2009.

Scientific Books (or Scientific Book chapters)

[61]: H. Astudillo, V. Codocedo, G. Canals, D. Torres, A. Diaz, A. Napoli, A. Gomes, M. Pimentel.
Combining Knowledge Discovery, Ontologies, Annotations, and Semantic Wikis, in: Webmedia Minicourse Book (WebMedia 2009, Brazilian Symposium on Multimedia and the Web), M. Teixeira (editor), Brazilian Computer Society (SBC), 2009
http://hal.inria.fr/inria-00435659/en/.
[62]: H. Cherfi, A. Napoli, Y. Toussaint.
A Conformity Measure using Background Knowledge for Association Rules: Application to Text Mining, in: Post-Mining of Association Rules: Techniques for Effective Knowledge Extraction, Y. Zhao, C. Zhang, L. Cao (editors), IGI Global, 2009
http://hal.archives-ouvertes.fr/inria-00437237/en/.
[63]: M.-D. Devignes, M. Smaïl-Tabbone.
Maîtriser les ressources numériques : biologie "in silico", in: Biologie L'ère numérique, M. Roux (editor), CNRS Editions, 06 2009, p. 189-222
http://hal.inria.fr/inria-00433477/en/, Chapitre 7.

Books or Proceedings Editing

[64]: B. Fuchs, A. Napoli (editors)
Actes du 17ième séminaire sur le raisonnement à partir de Cas, Paris (29–30 juin), LORIA, Nancy, 2009.

References in notes

[65]: F. Baader, D. Calvanese, D. McGuinness, D. Nardi, P. Patel-Schneider (editors)
The Description Logic Handbook, Cambridge University Press, Cambridge, UK, 2003.
[66]: P. Buitelaar, P. Cimiano, B. Magnini (editors)
Ontology Learning from Text: Methods, Evaluation and Applications, Frontiers in Artificial Intelligence and Applications, IOS Press, Amsterdam, 2005.
[67]: P. Hitzler, M. Krötsch, S. Rudolph (editors)
Foundations of Semantic Web Technologies, CRC Press, Boca raton (FL), 2009.
[68]: S. Staab, R. Studer (editors)
Handbook on Ontologies (Second Edition), Springer, Berlin, 2009.
[69]: F. Badra, R. Bendaoud, R. Bentebitel, P.-A. Champin, J. Cojan, A. Cordier, S. Desprès, S. Jean-Daubias, J. Lieber, T. Meilender, A. Mille, E. Nauer, A. Napoli, Y. Toussaint.
Taaable: Text Mining, Ontology Engineering, and Hierarchical Classification for Textual Case-Based Cooking, in: ECCBR 2008, The 9th European Conference on Case-Based Reasoning, Trier, Germany, September 1-4, 2008, Workshop Proceedings, 2008, p. 219-228.
[70]: M. Barbut, B. Monjardet.
Ordre et classification – Algèbre et combinatoire (2 tomes), Hachette, Paris, 1970.
[71]: R. Bendaoud, A. Napoli, Y. Toussaint.
Formal Concept Analysis: A unified framework for building and refining ontologies, in: Knowledge Engineering: Practice and Patterns - Proceedings of the 16th International Conference EKAW, A. Gangemi, J. Euzenat (editors), Lecture Notes in Computer Science 5268, 2008, p. 156–171.
[72]: C. Carpineto, G. Romano.
Concept Data Analysis: Theory and Applications, John Wiley & Sons, Chichester, UK, 2004.
[73]: C. Carpineto, G. Romano.
Exploiting the Potential of Concept Lattices for Information Retrieval with CREDO., in: Journal of Universal Computer Science, 2004, vol. 10, n^o 8, p. 985–1013.
[74]: P. Cimiano, A. Hotho, S. Staab.
Learning Concept Hierarchies from Text Corpora using Formal Concept Analysis, in: Journal of Artificial Intelligence Research, 2005, vol. 24, p. 305–339.
[75]: M. d'Aquin, F. Badra, S. Lafrogne, J. Lieber, A. Napoli, L. Szathmary.
Case Base Mining for Adaptation Knowledge Acquisition, in: Proceedings of the 20th International Joint Conference on Artificial Intelligence (IJCAI'07), M. M. Veloso (editor), Morgan Kaufmann, 2007, p. 750–755.
[76]: M. d'Aquin, C. Bouthier, S. Brachais, J. Lieber, A. Napoli.
Knowledge Edition and Maintenance Tools for a Semantic Portal in Oncology, in: International Journal on Human–Computer Studies, 2005, vol. 62, n^o 5, p. 619–638.
[77]: L. De Raedt.
Logical and Relational Learning, Cognitive Technologies, Springer, 2008.
[78]: B. Fuchs, J. Lieber, A. Mille, A. Napoli.
An Algorithm for Adaptation in Case-based Reasoning, in: Proceedings of the 14th European Conference on Artificial Intelligence (ECAI-2000), Berlin, W. Horn (editor), IOS Press, Amsterdam, 2000, p. 45–49.
[79]: B. Ganter, S. Kuznetsov.
Pattern Structures and Their Projections, in: Conceptual Structures: Broadening the Base, Proceedings of the 9th International Conference on Conceptual Structures, ICCS 2001, Stanford, CA, H. Delugach, G. Stumme (editors), Lecture Notes in Computer Science 2120, Springer, 2001, p. 129–142.
[80]: B. Ganter, R. Wille.
Formal Concept Analysis, Springer, Berlin, 1999.
[81]: P. Girardin, C. Bockstaller, H. V. der Werf.
Assessment of potential impacts of agricultural practices on the environment the AGRO* ECO method, in: Environmental Impact Assessment Review, 2000, vol. 20, n^o 2, p. 227–239.
[82]: M. Kaytoue-Uberall, S. Duplessis, A. Napoli.
Using Formal Concept Analysis for the Extraction of Groups of Co-expressed Genes, in: Modelling, Computation and Optimization in Information Systems and Management Sciences, Second International Conference, MCO 2008, Metz, France - Luxembourg, September 8-10, 2008. Proceedings, H. L. Thi, P. Bouvry, T. P. Dinh (editors), Communications in Computer and Information Science 14, Springer, 2008, p. 439–449.
[83]: J. Lieber, M. d'Aquin, F. Badra, A. Napoli.
Modeling adaptation of breast cancer treatment decision protocols in the KASIMIR project, in: Applied Intelligence, 2008, vol. 28, n^o 3, p. 261–274.
[84]: J. Lieber, A. Napoli, L. Szathmary, Y. Toussaint.
First Elements on Knowledge Discovery guided by Domain Knowledge (KDDK), in: Concept Lattices and Their Applications (CLA 06), S. B. Yahia, E. M. Nguifo, R. Belohlavek (editors), Lecture Notes in Artificial Intelligence 4923, Springer, Berlin, 2008, p. 22–41.
[85]: J.-F. Mari, J.-P. Haton, A. Kriouile.
Automatic Word Recognition Based on Second-Order Hidden Markov Models, in: IEEE Transactions on Speech and Audio Processing, 1997, vol. 5, p. 22 – 25.
[86]: J.-F. Mari, F. Le Ber.
Temporal and Spatial Data Mining with Second-Order Hidden Models, in: Soft Computing, 2006, vol. 10, n^o 5, p. 406–414.
[87]: A. Napoli.
A smooth introduction to symbolic methods for knowledge discovery, in: Handbook of Categorization in Cognitive Science, H. Cohen, C. Lefebvre (editors), Elsevier, Amsterdam, 2005, p. 913–933.
[88]: C. A. Orengo, A. D. Michine, S. Jones, D. T. Jones, M. B. Swindells, J. M. Thornton.
CATH - A Hierarchic Classification of Protein Domain Structures, in: Structure, 1997, vol. 5, n^o 8, p. 1093–1108.
[89]: V. I. Pérez-Nueno, D. W. Ritchie, J. I. Borrell, J. Teixidó.
Clustering and Classifying Diverse HIV Entry Inhibitors Using a Novel Consensus Shape-Based Virtual Screening Approach: Further Evidence for Multiple Binding Sites within the CCR5 Extracellular Pocket, in: Journal of Chemical Information and Modeling, 2008, vol. 48, n^o 11, p. 2146–2165.
[90]: V. I. Pérez-Nueno, D. W. Ritchie, O. Rabal, R. Pascual, J. I. Borrell, J. Teixidó.
Comparison of ligand-based and receptor-based virtual screening of HIV entry inhibitors for the CXCR4 and CCR5 receptors using 3D ligand shape matching and ligand-receptor docking, in: Journal of Chemical Information and Modeling, 2008, vol. 48, n^o 3, p. 509–533.
[91]: C. Pesquita, D. Faria, A. O. Falcão, P. Lord, F. M. Couto.
Semantic Similarity in Biomedical Ontologies, in: PLoS Comput Biol, 2009, vol. 5.
[92]: D. W. Ritchie, G. J. L. Kemp.
Protein Docking Using Spherical Polar Fourier Correlations, in: Proteins: Structure, Function and Genetics, 2000, vol. 39, n^o 2, p. 178–194.
[93]: M. Rouane-Hacene, M. Huchard, A. Napoli, P. Valtchev.
A proposal for combining Formal Concept Analysis and description Logics for mining relational data, in: Proceedings of the 5th International Conference on Formal Concept Analysis (ICFCA 2007), Clermont-Ferrand, S. Kuznetsov, S. Schmidt (editors), LNAI 4390, Springer, Berlin, 2007, p. 51–65.
[94]: A. Stein, R. B. Russell, P. Aloy.
3did: interacting protein domains of known three-dimensional structure, in: Nucleic Acids Res., 2005, vol. 33, p. D413–D417.
[95]: L. Szathmary.
Symbolic Data Mining Methods with the Coron Platform, Université Henri Poincaré (Nancy 1), 2006, Thèse d'informatique.
[96]: L. Szathmary, P. Valtchev, A. Napoli, R. Godin.
Constructing Iceberg Lattices from Frequent Closures Using Generators, in: Discovery Science, J.-F. Boulicaut, M. Berthod, T. Horváth (editors), Lecture Notes in Computer Science 5255, Springer, Berlin, 2008, p. 136–147.
[97]: C. Winter, A. Henschel, W. K. K. and. M. Schroeder.
SCOPPI: a structural classification of protein-protein interfaces, in: Nucleic Acids Research, 2006, vol. 34, p. D310–D314.

Logo Inria