Bibliography

Major publications by the team in recent years

[1]

F. Campillo, M. Klepstyna, A. Piatnitski.
Homogenization of random parabolic operator with large potential, in: Stochastic Processes and Their Applications, 2001, vol. 93, p. 57–85.

[2]

F. Campillo, Y. Kutoyants, F. Le Gland.
Small Noise Asymptotics of the GLR Test for Off-Line Change Detection in Misspecified Diffusion Processes, in: Stochastics and Stochastics Reports, 2000, vol. 70, n^o 1–2, p. 109–129.

[3]

P. Gajardo, H. Ramirez, A. Rapaport.
Minimal time sequential batch reactors with bounded and impulse controls for one or more species, in: SIAM Journal of Control and Optimization, 2008, vol. 47, n^o 6, p. 2827–2856.

[4]

B. Haegeman, R. Etienne.
Entropy maximization and the spatial distribution of species, in: The American Naturalist, 2009, to appear.

[5]

B. Haegeman, D. Vanpeteghem, J. Godon, J. Hamelin.
DNA reassociation kinetics and diversity indices: Richness is not rich enough, in: Oikos, 2008, vol. 117, p. 177–181.

[6]

C. Lobry, F. Mazenc, A. Rapaport.
Persistence in ecological models of competition for a single resource, in: Comptes Rendus de l'Académie des Sciences, Série Mathématiques, 2005, vol. 340, p. 199–204.

[7]

P. Loisel, J. Harmand, O. Zemb, E. Latrille, C. Lobry, J. Delgenès, J. Godon.
DGE and SSCP molecular fingerprintings revisited by simulation and used as a tool to measure microbial diversity, in: Environmental Microbiology, 2006, vol. 8, n^o 4, p. 720–731.

[8]

M. Malisoff, F. Mazenc.
Constructions of Strict Lyapunov Functions, Communications and Control Engineering Series, Springer-Verlag Londen Ltd., London, UK, 2009
http://www.springerlink.com/content/978-1-84882-534-5.

[9]

F. Mazenc, D. Nesic.
Strong Lyapunov functions for systems satisfying the conditions of La Salle, in: IEEE Trans. Aut. Contr., 2004, vol. 49, n^o 6, p. 1026–1030.

[10]

A. Rapaport, D. Dochain, J. Harmand.
Long run coexistence in the chemostat with multiple species, in: Journal of Theoretical Biology, 2009, vol. 257, n^o 2, p. 252–259.

Publications of the year

Articles in International Peer-Reviewed Journal

[11]

H. Boudjellaba, T. Sari.
Dynamic transcritical bifurcations in a class of slow-fast predator-prey models, in: Journal of Differential Equations, 2009, vol. 246, p. 2205–2225
http://hal.archives-ouvertes.fr/hal-00270315/.

[12]

F. Campillo, R. Rakotozafy, V. Rossi.
Parallel and interacting Markov chain Monte Carlo algorithm, in: Mathematics and Computers in Simulation, 2009, vol. 79, p. 3424–3433.

[13]

F. Campillo, V. Rossi.
Convolution filter based methods for parameter estimation in general state-space models, in: IEEE Transactions on Aerospace and Electronic Systems, 2009, vol. 45, p. 1063–1072.

[14]

M. Dumont, J. Harmand, A. Rapaport, J. Godon.
Toward functional molecular fingerprints, in: Environmental Microbiology, 2009, vol. 11, n^o 7, p. 1717–1727.

[15]

M. El-Hajji, J. Harmand, H. Chaker, C. Lobry.
Association between competition and obligate mutualism in a chemostat, in: Journal of Biological Dynamics, 2009, to appear.

[16]

M. El-Hajji, A. Rapaport.
Practical coexistence of two species in the chemostat: a slow-fast characterization, in: Mathematical Biosciences, 2009, vol. 218, n^o 1, p. 33–39.

[17]

P. Gajardo, F. Mazenc, H. Ramirez.
Competitive exclusion principle in a model of chemostat with delay, in: Dynamics of Continuous, Discrete and Impulsive Systems Series A, 2009, vol. 16, p. 253–272.

[18]

B. Haegeman, R. Etienne.
Entropy maximization and the spatial distribution of species, in: The American Naturalist, 2009, to appear.

[19]

B. Haegeman, R. Etienne.
Neutral models with generalized speciation, in: Bulletin of Mathematical Biology, 2009, vol. 71, p. 1507–1519.

[20]

B. Haegeman, M. Loreau.
Trivial and non-trivial applications of entropy maximization in ecology: a reply to Shipley, in: Oikos, 2009, vol. 118, p. 1270–1278.

[21]

T. Hangan, V. Murea, T. Sari.
Poleni curves on surfaces of constant curvature, in: Rendiconti del Seminario Matematico - Università e Politecnico di Torino, 2009, vol. 67, p. 59–76
http://hal.archives-ouvertes.fr/hal-00204551/.

[22]

M. Jerry, A. Rapaport, P. Cartigny.
Can protected areas potentially enlarge viability domains for harvesting management?, in: Nonlinear Analysis: Real World Applications, 2010, vol. 11, n^o 2, p. 720–734.

[23]

N. Mabrouk, G. Deffuant, T. Toelker-Nielsen, C. Lobry.
Bacteria can form interconnected microcolonies when a self-excreted product reduces their surface motility: evidence from individual-based model simulations, in: Theory in Biosciences, 2009, to appear.

[24]

F. Mazenc, O. Bernard.
Asymptotically stable interval observers for planar systems with complex poles, in: IEEE Transactions on Automatic Control, 2009, to appear.

[25]

F. Mazenc, M. de Queiroz, M. Malisoff.
Uniform global asymptotic stability of a class of adaptively controlled nonlinear systems, in: IEEE Transactions on Automatic Control, 2009, vol. 54, p. 1152-1158.

[26]

F. Mazenc, M. Malisoff, O. Bernard.
A simplified design for strict Lyapunov functions under Matrosov conditions, in: IEEE Transactions on Automatic Control, 2009, vol. 54, p. 177–183.

[27]

F. Mazenc, M. Malisoff, J. Harmand.
Stabilization in a two-species chemostat with Monod growth functions, in: IEEE Transactions on Automatic Control, 2009, vol. 54, p. 855-861.

[28]

F. Mazenc, M. Malisoff.
Strict Lyapunov function constructions under LaSalle conditions with an application to Lotka-Volterra systems, in: IEEE Transactions on Automatic Control, 2009, to appear.

[29]

D. Mazouni, J. Harmand, A. Rapaport, H. Hammouri.
Optimal time control of switching systems: application to biological sequencing batch reactors, in: Optimal Control Application and Methods, 2009, to appear.

[30]

A. Piazza, A. Rapaport.
Optimal control of renewable resources with alternative use, in: Mathematical and Computer Modelling, 2009, vol. 50, p. 260–272.

[31]

L. Ranjard, S. Dequiedt, C. Jolivet, N. Saby, J. Thioulouse, J. Harmand, P. Loisel, A. Rapaport, S. Fall, P. Simonet, R. Joffre, N. Chemidlin-Prévost Bouré, P.-A. Maron, C. Mougel, M. Martin, B. Toutain, D. Arrouays, P. Lemanceau.
Biogeography of soil microbial communities: a review and a description of the ongoing french national initiative, in: Agronomy for Sustainable Development, 2009, to appear.

[32]

A. Rapaport, D. Dochain, J. Harmand.
Long run coexistence in the chemostat with multiple species, in: Journal of Theoretical Biology, 2009, vol. 257, n^o 2, p. 252–259.

[33]

D. Vanpeteghem, B. Haegeman.
An analytical approach to spatio-temporal dynamics of neutral community models, in: Journal of Mathematical Biology, 2009, to appear.

International Peer-Reviewed Conference/Proceedings

[34]

F. Campillo, M. Joannides.
A spatially explicit Markovian individual-based model for terrestrial plant dynamics, in: International Conference on Approximation Methods and Numerical Modelling in Environment and Natural Resources, MAMERN'09, Pau, France, 2009.

[35]

C. de Persis, F. Mazenc.
Stability of quantized time-delay nonlinear systems: a Lyapunov-Krasowskii-functional approach, in: IEEE Conference on Decision and Control, Shanghai, China, 2009, 2009.

[36]

J. Harmand, D. Dochain, A. Rapaport, J. Godon.
Observers for the estimation of functional groups in the anaerobic digestion, in: 6th Conference on Mathematical Modelling, Vienna, Austria, February 2009, 2009.

[37]

J. Harmand, A. Rapaport, D. Dochain, J. Godon.
Observers for the assignation of species to functional groups in the anaerobic digestion, in: 6th Conference on Mathematical Modelling, Vienna, Austria, February 2009, 2009.

[38]

C. Lobry, A. Rapaport, T. Sari.
Stability loss delay in the chemostat with a slowly varying washout rate, in: 6th Conference on Mathematical Modelling, Vienna, Austria, February 2009, 2009.

[39]

F. Mazenc, O. Bernard.
Internal observers for planar systems with complex poles, in: European Control Conference, Budapest, Hungary, 2009, 2009.

[40]

F. Mazenc, Z. Jiang.
Time-varying control laws with guaranteed persistence for a class of multi-species chemostat, in: IEEE Conference on Decision and Control, Shanghai, China, 2009, 2009.

[41]

F. Mazenc, M. Malisoff.
Lyapunov functions under LaSalle conditions with an application to Lotka-Volterra systems, in: American Control Conference, St. Louis, MO, 2009, 2009.

[42]

F. Mazenc, S. Niculescu, O. Bernard.
Interval observers for linear systems with delay, in: IEEE Conference on Decision and Control, Shanghai, China, 2009, 2009.

[43]

H. Ramirez, P. Gajardo, J. Harmand, A. Rapaport.
About biological treatment of water resources in minimal time, in: STIC et Environnement, Calais, France, June 2009, 2009.

Scientific Books (or Scientific Book chapters)

[44]

M. Malisoff, F. Mazenc.
Constructions of Strict Lyapunov Functions, Communications and Control Engineering Series, Springer-Verlag Londen Ltd., London, UK, 2009
http://www.springerlink.com/content/978-1-84882-534-5.

Patents and standards

[45]

B. Haegeman, J. Hamelin, J. Godon, J. Harmand, P. Loisel.
A method for measuring the biological diversity of a sample, 04 2009, n^o WO 2009/053393
http://v3.espacenet.com/publicationDetails/biblio?CC=WO&NR=2009053393, patent.

Other Publications

[46]

F. Campillo, N. Champagnat, P. D. Moral.
Individual-based models of prairial ecosystems, 2009, Technical report, ANR project MODECOL – Intermediate report, June 2009.

[47]

F. Campillo, M. Joannides.
A spatially explicit Markovian individual-based model for terrestrial plant dynamics, 2009, E-print arXiv Mathematics 0904.3632u1, April 2009.

[48]

C. Lobry, B. Philippe.
Rapport d'exécution du programme SARIMA, 2009, Technical report, Ministère des Affaires Etrangères et Européennes, June 2009.

[49]

C. Lobry, T. Sari.
La modélisation de la persistance en écologie, 2009
http://hal.archives-ouvertes.fr/hal-00408165/, Technical report, hal.archives.ouvertes, July 2009.

[50]

H. Ramirez, P. Gajardo, J. Harmand, A. Rapaport.
About biological treatment of water resources in minimal time, 2009
http://www.dim.uchile.cl/download.php?file=pdf/CMM_B_09_11_231_7.pdf, Technical report, UMR CNRS/Univ. de Chile CMM, Santiago de Chile, CMM-B-09/11-231.

[51]

T. Sari, F. Mazenc.
Global dynamics of the chemostat with different removal rates and variable yields, 2009
http://hal.archives-ouvertes.fr/hal-00418676/, Technical report, hal.archives.ouvertes, September 2009.

References in notes

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R. Arditi, H. Saiah.
Empirical evidence of the role of heterogeneity in ratio-dependent consumption, in: Ecology, 1992, vol. 73, n^o 5, p. 1544–1551.

[53]

R. Armstrong, R. McGehee.
Coexistence of species competing for shared resources, in: Theor. Popul. Biol., 1976, vol. 9, n^o 3, p. 317-328.

[54]

H. S. Chang, M. Fu, J. Hu, S. I. Marcus.
A Survey of Some Simulation-Based Algorithms for Markov Decision Processes, in: Communications in Information and Systems, 2007, vol. 7, n^o 1, p. 59–92.

[55]

P. Del Moral.
Feynman-Kac formulae – Genealogical and interacting particle approximations, Springer Verlag, New York, 2004.

[56]

A. Doucet, N. de Freitas, N. Gordon.
Sequential Monte Carlo Methods in Practice, Springer Verlag, New York, 2001.

[57]

M. Duflo.
Algorithmes Stochastiques, Mathématiques & Applications, Springer Verlag, Paris, 1996, vol. 23.

[58]

N. Fournier, S. Méléard.
A microscopic probabilistic description of a locally regulated population and macroscopic approximations, in: Annals of Applied Probability, 2004, vol. 14, p. 1880-1919.

[59]

S. Hubbell.
The Unified Neutral Theory of Biodiversity and Biogeography, Princeton University Press, 2001.

[60]

C. Jessup, R. Kassen, S. Forde, B. Kerr, A. Buckling, P. Rainey, J. Bohannan.
Big questions, small world: microbial model systems in ecology, in: Trends in Ecology and Evolution, 2004, vol. 19, n^o 4, p. 189–197.

[61]

J. Liu.
Monte Carlo Strategies in Scientific Computing, Springer Verlag, New York, 2001.

[62]

S. Meyn, R. Tweedie.
Markov Chains and Stochastic Stability, Springer-Verlag, 1993.

[63]

C. P. Robert, G. Casella.
Monte Carlo Statistical Methods, 2nd, Springer Verlag, Berlin, 2004.

[64]

M. Tanner.
Tools for Statistical Inference. Methods for the Exploration of Posteriors and Likelihoods Functions, 3rd ed. 1996. Corr. 2nd printing edition, Springer Verlag, Berlin, 1998.

[65]

G. Wolkowicz.
Successful Invasion of a Food Web in a Chemosta, in: Mathematical Bioscience, 1989, vol. 93, p. 249-263.