Team VisAGeS

Members
Overall Objectives
Scientific Foundations
Application Domains
Software
New Results
Other Grants and Activities
Dissemination
Bibliography

Bibliography

Major publications by the team in recent years

[1]
I. Corouge, P. Hellier, B. Gibaud, C. Barillot.
Inter-individual functional mapping: a non linear local approach, in: Neuroimage, 2003, vol. 19, no 4, p. 1337-1348.
[2]
H. P. Hartung, R. Gonsette, N. Konig, H. Kwiecinski, A. Guseo, S. P. Morrissey, H. Krapf, T. Zwingers.
Mitoxantrone in progressive multiple sclerosis: a placebo-controlled, double-blind, randomised, multicentre trial, in: Lancet, 0140-6736 Clinical Trial Journal Article Multicenter Study Randomized Controlled Trial, 2002, vol. 360, no 9350, p. 2018-25.
[3]
P. Hellier, C. Barillot.
Coupling dense and landmark-based approaches for non rigid registration, in: IEEE Transactions on Medical Imaging, 2003, vol. 22, no 2, p. 217-227.
[4]
P. Hellier, C. Barillot, E. Mémin, P. Pérez.
Hierarchical estimation of a dense deformation field for 3D robust registration, in: IEEE Transactions on Medical Imaging, 2001, vol. 20, no 5, p. 388-402.
[5]
P. Jannin, X. Morandi, O. Fleig, E. Le Rumeur, P. Toulouse, B. Gibaud, J. Scarabin.
Integration of sulcal and functional information for multimodal neuronavigation, in: Journal of Neurosurgery, 2002, vol. 96, p. 713-723.
[6]
G. Le Goualher, C. Barillot, Y. Bizais.
Three-dimensional segmentation and representation of cortical sulci using active ribbons, in: Int. J. of Pattern Recognition and Artificial Intelligence, 1997, vol. 11, no 8, p. 1295-1315.
[7]
G. Le Goualher, E. Procyk, L. Collins, R. Venegopal, C. Barillot, A. Evans.
Automated extraction and variability analysis of sulcal neuroanatomy, in: IEEE Transactions on Medical Imaging, 1999, vol. 18, no 3, p. 206-217.
[8]
S. Prima, S. Ourselin, N. Ayache.
Computation of the mid-sagittal plane in 3D brain images, in: IEEE Transactions on Medical Imaging, 2002, vol. 21, no 2, p. 122-138.
[9]
R. Robb, C. Barillot.
Interactive Display and Analysis of 3-D Medical Images, in: IEEE Transactions on Medical Imaging, 1989, vol. 8, no 3, p. 217-226.

Publications of the year

Articles in refereed journals and book chapters

[10]
C. Barillot.
Medical Signal Processing and Biomedical Imaging, in: Shaping the Futures: 10 years of Irisatech, Rennes, J.-L. Delhaye, J.-P. Banatre (editors), IRISAtech, 2007, p. 87-104.
[11]
C. Barillot.
The Digital Patient in clinical neuroscience, the 'VISAGES' point of View, in: ERCIM News, 2007, no 69, p. 18-19
http://ercim-news.ercim.org/content/view/169/411/.
[12]
P. Coupe, P. Hellier, X. Morandi, C. Barillot.
Probe Trajectory Interpolation for 3D Reconstruction of Freehand Ultrasound, in: Medical Image Analysis, dec 2007
http://www.irisa.fr/visages/pdf/Coupe07b.pdf.
[13]
A. Cuzol, P. Hellier, E. Mémin.
A low dimensional fluid motion estimator, in: International journal of computer vision, 2007, vol. 75, no 3, p. 329–350.
[14]
O. Dameron, M. Musen, B. Gibaud.
Using semantic dependencies for consistency management of an ontology of brain-cortex anatomy, in: Artificial Intelligence in Medicine, 1240607, 2007, vol. 39, no 3, p. 217-225
http://portal.acm.org/citation.cfm?id=1240607#.
[15]
B. Gibaud, J. Chabriais.
Place des standards dans le contexte de la compression des données médicales, A. Nait-Ali, C. Cavaro-Ménard (editors), Traité IC2, de Hermès-Lavoisier, 2007, p. 99–123.
[16]
P. Jannin, X. Morandi.
Surgical models for computer-assisted neurosurgery, in: Neuroimage, 2007, vol. 37, no 3, p. 783–91.
[17]
E. Leray, S. P. Morrissey, J. Yaouanq, M. Coustans, E. Le Page, J. Chaperon, G. Edan.
Long-term survival of patients with multiple sclerosis in West France, in: Mult Scler, 2007, vol. 13, no 7, p. 865-74
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=17881399.
[18]
D. Tosun, S. Duchesne, Y. Rolland, A. Toga, M. Verin, C. Barillot.
3-D Analysis of Cortical Morphometry in Differential Diagnosis of Parkinson's Plus Syndromes: Mapping Frontal Lobe Cortical Atrophy in Progressive Supranuclear Palsy Patients, in: Medical Image Computing and Computer Assisted Intervention (Miccai'2007), N. Ayache, S. Ourselin, A. Maeder (editors), Lecture Notes in Computer Science (LNCS), 2007, vol. 4792, p. 891-899.
[19]
N. Wiest-Daessle, S. Prima, P. Coupe, S. Morrissey, C. Barillot.
Non-local means variants for denoising of diffusion-weighted and diffusion tensor MRI, in: Medical Image Computing and Computer Assisted Intervention (Miccai'2007), N. Ayache, S. Ourselin, A. Maeder (editors), Lecture Notes in Computer Science (LNCS), Springer-Verlag, 2007, vol. 4792, p. 344–351
http://www.irisa.fr/visages/pdf/WiestDaessle07c.pdf.

Publications in Conferences and Workshops

[20]
C. Barillot, P. Coupé, O. El Ganaoui, B. Gibaud, P. Hellier, P. Jannin, P. Paul, S. Prima, N. Wiest-Daesslé, X. Morandi.
Image Guidance In Neurosurgical Procedures, The "Visages" Point Of View, in: IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI'2007, Washington, USA, Invited Lecture, 2007
http://ieeexplore.ieee.org/search/wrapper.jsp?arnumber=4193217.
[21]
P. Coupé, P. Hellier, X. Morandi, C. Barillot.
A Probabilistic Objective Function For 3d Rigid Registration Of Intraoperative Us And Preoperative Mr Brain Images, in: IEEE ISBI, 2007
http://www.irisa.fr/visages/pdf/Coupe07a.pdf.
[22]
S. Duchesne, Y. Rolland, M. Verin, C. Barillot.
Computer aided differential diagnosis in movement disorders using MRI morphometry, in: SPIE Medical Imaging, San Diego, N. Karssemeijer, M. L. Giger (editors), SPIE Optical Society, 2007.
[23]
C. Kervrann, J. Boulanger, P. Coupé.
Bayesian non-local means filter, image redundancy and adaptive dictionaries for noise removal, in: Proc. Conf. Scale-Space and Variational Meth. (SSVM' 07), Ischia, Italy, 2007
http://www.irisa.fr/visages/pdf/Kervrann07a.pdf.
[24]
A. Mechouche, C. Golbreich, B. Gibaud.
Towards a Hybrid System Using an Ontology Enriched by Rules for the Semantic Annotation of Brain MRI Images, in: Web Reasoning and Rule Systems, Lecture Notes in Computer Science, 2007, vol. 4524, p. 219-228.
[25]
A. Mechouche, C. Golbreich, B. Gibaud.
Vers un système hybride pour l'annotation sémantique d'images IRM du cerveau, in: Extraction et gestion des connaissances (EGC'2007), 2007, p. 433-444.
[26]
S. Prima, N. Wiest-Daesslé.
Computation of the mid-sagittal plane in diffusion tensor MR brain images, in: Proceedings of SPIE Medical Imaging 2007: Image Processing, San Diego, USA, I. Taylor (editor), 2007.
[27]
L. Temal, P. Lando, M. Dojat, D. Furst, B. Gibaud, G. Kassel, A. Lapujade.
OntoNeuroLog: une ontologie modulaire et multi-niveaux pour gérer l'hétérogénéité sémentique des métadonnées, in: Actes de la journée thématique Ontologies et Gestion de l'Hétérogénéité Sémantique du GDR I3 (Grenoble, 3 juillet 2007), 2007.
[28]
D. Tosun, S. Duchesne, A. Toga, C. Barillot, Y. Rolland, M. Vérin.
Cortical Atrophy Patterns in PSP and MSA Patients Detected via 3D Cortical Morphometry on MRI, in: 11th International Congress of Parkinson's Disease and Movement Disorder, Ankara, Turkey, The Movement Disorder Society, 2007.
[29]
J. Ure, R. Procter, M. Martone, D. Porteous, S. Lloyd, S. Lawrie, D. Job, R. Baldock, A. Philp, D. Liewald, F. Rakebrandt, A. Blaikie, C. McKay, S. Anderson, J. Ainsworth, J. van Hemert, I. Blanquer, R. Sinnott, C. Barillot, B. Gibaud, A. Williams, M. Hartswood, P. Watson, L. Smith, A. Burger, J. Kennedy, H. Gonzalez-Velez, R. Stevens, O. Corcho, R. Morton, P. Linksted, M. Deschenes, M. McGilchrist, P. Johnson, A. Voss, R. Gertz, J. Wardlaw.
Data Integration in eHealth: A Domain/Disease Specific Roadmap, in: From genes to personalized healthcare: Grid solutions for the Life Sciences - Proceedings of HealthGrid 2007 - HealthGrid 2007, Geneve, CH, N. Jacq, Y. Legré, H. Muller, I. Blanquer, V. Breton, D. Hausser, V. Hernandez, T. Solomonides, M. Hofman-Apitius (editors), 2007, vol. 126, p. 144–153
http://idefix.pms.ifi.lmu.de:8080/rewerse/index.html#REWERSE-RP-2007-055.
[30]
N. Wiest-Daesslé, S. Prima, S. Morrissey, C. Barillot.
Validation of a new optimisation algorithm for registration tasks in medical imaging, in: IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI'2007, Arlington, VA, inproceedings, IEEE, 2007, p. 41–44
http://www.irisa.fr/visages/pdf/WiestDaessle07b.pdf.
[31]
N. Wiest-Daesslé, P. Yger, S. Prima, C. Barillot.
Evaluation of a new optimisation algorithm for rigid registration of MRI data, in: Proceedings of SPIE Medical Imaging 2007: Image Processing, San Diego, USA, I. Taylor (editor), inproceedings, 2007
http://www.irisa.fr/visages/pdf/WiestDaessle07a.pdf.

Internal Reports

[32]
J. Lecoeur, C. Barillot.
Segmentation d'images cérébrales : Etat de l'art, Technical report, INRIA, September 2007, no 6306
http://www.irisa.fr/visages/pdf/RR-6306.pdf.

Miscellaneous

[33]
C. Barillot.
Image Guidance In Neurosurgical Procedures, The "Visages" Point Of View, Invited Lecture, IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI'2007, April 2007
http://ieeexplore.ieee.org/search/wrapper.jsp?arnumber=4193217.
[34]
C. Barillot.
Integration of Distributed and Heterogeneous resources in Neuroimaging, Invited Lecture, MICCAI'07 workshop on Content-based Image Retrieval for Biomedical Image Archives: Achievements, Problems, and Prospects, October 29th 2007.
[35]
P. Coupé, P. Hellier, X. Morandi, C. Barilllot.
Dispositif de traitement d'images pour la mise en correspondance d'images d'une même portion d'un corps obtenues par résonance magnétique et par ultrasons, 2/4/07 2007, no 07/02386.
[36]
P. Hellier.
Correction of Local Acoustic Shadows - CLASH, Depot a l'agence pour la protection des programmes, July 2007, vol. IDDN.FR.001.270019.000.S.P.2007.000.21000.

References in notes

[37]
C. Baillard, C. Barillot.
Robust 3D Segmentation of Anatomical Structures with Level Sets, in: Medical Image Computing and Computer-Assisted Intervention, Pittsburgh, PA, Lecture Notes in Computer Sciences, Springer-Verlag, 2000, vol. lncs-1935, p. 236-245.
[38]
C. Baillard, P. Hellier, C. Barillot.
Segmentation of brain 3D MR images using level sets and dense registration, in: Medical Image Analysis, 2001, vol. 5, no 3, p. 185-194.
[39]
C. Barillot.
Fusion de données et imagerie 3D en medecine., Habilitation à diriger des recherches, Université de Rennes I, 1999.
[40]
I. Corouge, C. Barillot.
Use of a probabilistic shape model for non-linear registration of 3D scattered data, in: IEEE Int. Conf. on Image Processing, ICIP'2001, Thessaloniki, Greece, IEEE Press, 2001, p. 149-152.
[41]
I. Corouge, M. Dojat, C. Barillot.
Statistical shape modeling of low level visual area borders, in: Medical Image Analysis, 2004, vol. 8, no 3, p. 353-360
http://authors.elsevier.com/sd/article/S1361841504000350.
[42]
I. Corouge, P. Hellier, B. Gibaud, C. Barillot.
Inter-individual functional mapping: a non linear local approach, in: Neuroimage, 2003, vol. 19, no 4, p. 1337–1348
http://dx.doi.org/10.1016/S1053-8119(03)00158-7.
[43]
P. Coupé, P. Hellier, X. Morandi, C. Barillot.
Probe Trajectory Interpolation for 3D Reconstruction of Freehand Ultrasound, in: Medical Image Analysis, to appear, 2007.
[44]
P. Hellier, J. Ashburner, I. Corouge, C. Barillot, K. Friston.
Inter subject registration of functional and anatomical data using SPM, in: Medical Image Computing and Computer-Assisted Intervention - MICCAI 2002, Tokyo, R. Kikinis, R. Ellis, T. Dohi (editors), Lecture Notes in Computer Sciences, Springer-Verlag, 2002, vol. LNCS-2489, p. 590-587.
[45]
P. Hellier, C. Barillot, I. Corouge, B. Gibaud, G. Le Goualher, D. Collins, A. Evans, G. Malandain, N. Ayache, G. Christensen, H. Johnson.
Retrospective Evaluation of Intersubject Brain Registration, in: IEEE Transactions on Medical Imaging, 2003, vol. 22, no 9, p. 1120-1130.
[46]
P. Hellier, C. Barillot.
Coupling dense and landmark-based approaches for non rigid registration, in: IEEE Transactions on Medical Imaging, Journal Article, 2003, vol. 22, no 2, p. 217-227.
[47]
P. Hellier, C. Barillot, E. Mémin, P. Pérez.
Hierarchical estimation of a dense deformation field for 3D robust registration, in: IEEE Transaction on Medical Imaging, 2001, vol. 20, no 5, p. 388-402.
[48]
J. West, J. Fitzpatrick, M. Wang, B. Dawant, C. Maurer, R. Kessler, R. Maciunas, C. Barillot, D. Lemoine, A. Collignon, F. Maes, P. Suetens, D. Vandermeulen, P. van den Elsen, S. Napel, T. Sumanaweera, B. Harkness, P. Hemler, D. Hill, D. Hawkes, C. Studholme, J. Maintz, M. Viergever, G. Malandain, X. Pennec, M. Noz, G. Maguire, M. Pollack, C. Pellizzari, R. Robb, D. Hanson, R. Woods.
Comparison and Evaluation of Retrospective Intermodality Brain Image Registration Techniques, in: J. Computer Assisted Tomography, 1997, vol. 21, p. 554-566.
[49]
N. Wiest-Daesslé, S. Prima, P. Coupé, S. Morrissey, C. Barillot.
Non-local means variants for denoising of diffusion-weighted and diffusion tensor MRI, in: Medical Image Computing and Computer Assisted Intervention (Miccai'2007), N. Ayache, S. Ourselin, A. Maeder (editors), Lecture Notes in Computer Science (LNCS), Springer-Verlag, 2007, vol. 4792, p. 344–351
http://www.irisa.fr/visages/pdf/WiestDaessle07c.pdf.
[50]
N. Wiest-Daesslé, S. Prima, S. Morrissey, C. Barillot.
Validation of a new optimisation algorithm for registration tasks in medical imaging, in: IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI'2007, Arlington, VA, inproceedings, IEEE, 2007, p. 41–44
http://www.irisa.fr/visages/pdf/WiestDaessle07b.pdf.

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