Team HELIX

Members
Overall Objectives
Scientific Foundations
Application Domains
Software
New Results
Contracts and Grants with Industry
Other Grants and Activities
Dissemination
Bibliography

Section: Dissemination

Talks

Bastien Boussau

Table 22.
TitleEvent and locationDate
Evolution of thermophilyMeeting "LUCA, ten years after", Fondation Les Treilles, Tourtour, FranceSept. 2006

Eric Coissac

Table 23.
TitleEvent and locationDate
Unipathway: a metabolic door to UniProtKB/Swiss-ProtThird Indo-French Bioinformatics Meeting (IFBM 2006)Bangalore (India), June 2006
Du gène à l'environnementÉcole CNRS Microbiologie moléculaire, Carry Le RouetOct. 2006
Unipathway: une porte d'entrée vers le métabolisme dans Swiss-ProtSéminaire de l'unité ``Génétique moléculaire de la levure'', Institut PasteurDec. 2006

Laurent Duret

Table 24.
TitleEvent and locationDate
Homology-dependent methylation of repetitive DNA in mammals: what can we learn from comparative genomics?Reunion Alphy, LyonJan. 2006
Deciphering substitution pattern variations along mammalian genomes: control of transposable elements and other storiesVIB, Ghent, BelgiumFeb. 2006
Analysis of excision polymorphism in the macronucleus of Paramecium tetraurelia "International Paramecium Genomics Meeting", DourdanMay 2006
The impact of recombination on the evolution of mammalian genomesUniversity of Bern, SwitzerlandJun. 2006
The Xist RNA Gene Evolved in Eutherians by Pseudogenization of a Protein-Coding GeneSecond International Conference on X-inactivation", ParisSept. 2006
The impact of whole genome duplications: insights from Paramecium tetraurelia ''Otto Warburg International Summer School and Workshop 2006 on Evolutionary Genomics'', Berlin, GermanySept. 2006
The impact of whole genome duplications: insights from Paramecium tetraurelia Reunion GTGC, NantesOct. 2006
The impact of whole genome duplications: insights from Paramecium tetraurelia University of Lausanne, SwitzerlandDec. 2006

Samuel Drulhe

Table 25.
TitleEvent and locationDate
Reconstruction of switching thresholds in piecewise-affine models of genetic regulatory networksHybrid Systems: Computation and Control (HSCC) 2006, Santa Barbara, USAMar. 2006

Christian Gautier

Table 26.
TitleEvent and locationDate
Some bioinformatics tools for studying microbial diversityMeeting COST 853, Working group ``Bioinformatics and information dissemination'', Zurich, SwitzerlandMar. 2006

Manolo Gouy

Table 27.
TitleEvent and locationDate
Contribution of comparative genomics to the analysis of mitochondrial evolution in protistsUniversity of Milano, ItalyMar. 2006
Efficient likelihood computation with non-reversible evolutionary modelsUniversity of Ottawa, CanadaMay 2006

Hidde de Jong

Table 28.
TitleEvent and locationDate
Qualitative modeling and simulation of the carbon starvation response in Escherichia coli TIGEM seminar, NaplesFeb. 2006
Qualitative simulation of the carbon starvation response in Escherichia coli Annual Conference of the Vereinigung für Allgemeine und Angewandte Mikrobiologie (VAAM), Jena, GermanyMar. 2006
Qualitative modeling and simulation of bacterial stress responses4th Workshop on Statistical methods for molecular biology high throughput data, ToulouseMar. 2006
Modeling, analysis, and simulation of genetic regulatory networks (with Jean-Luc Gouzé)CEA-EDF-INRIA School on Nonsmooth Dynamical Systems: Analysis, Control, Simulation, and Applications, RocquencourtMay 2006
Qualitative modeling of the carbon starvation response in E. coli Workshop Towards Molecular Systems Biology, Bielefeld University, Centre for Interdisciplinary Research (ZIF), GermanyJun. 2006
Introduction to the modelling of genetic regulatory networks, Qualitative analysis of piecewise-linear models of genetic regulatory networks & Application: qualitative analysis of the carbon starvation response in E. coli EPSRC (Engineering and Physical Research Council) Graduate Course on Networks, Bristol, UKJul. 2006
Qualitative modeling and simulation of genetic regulatory networks: From piecewise-affine differential equations to reporter gene data (and back)Keynote lecture 20th International Workshop on Qualitative Reasoning, Dartmouth, USAJul. 2006
Qualitative modeling and simulation of genetic regulatory networksBioIT Management and Modeling, EuroBio06, ParisOct. 2006
Qualitative simulation of the carbon starvation response in Escherichia coli Colloque SFG Genetics meets Systems Biology. Theory and PracticeNov. 2006
An overview of methods for the modelling and simulation of genetic regulatory networks & Qualitative modelling and simulation of bacterial regulatory networksBioInfoSummer symposium, Canberra, AustraliaDec. 2006

Daniel Kahn

Table 29.
TitleEvent and locationDate
Modularité et plasticité des systèmes régulateurs chez les bactéries: l'exemple de la régulation de la fixation de l'azoteLaboratoire de Biométrie et Biologie Evolutive, University Claude BernardJan. 2006
L'évolution des familles de protéines analysée par réseau BayésienGénoscope, EvryFeb. 2006
Modularité des protéines et identification des enzymes codés dans les génomesSwiss Institute of Bioinformatics, GenevaMay 2006
Approaches for reconstructing metabolism and its evolutionWorkshop on Molecular Systems Biology, BielefeldJun. 2006
Protein domain families and protein innovationCelebrating the 20th Anniversary of Swiss-Prot, FortalezaAug. 2006
Comment modéliser l'interaction entre régulations métaboliques et régulations géniques ?RIAMS 2006, LyonNov. 2006

Anne Morgat

Table 30.
TitleEvent and locationDate
UniPathway: a metabolic door to UniProtKB/Swiss-Prot''In silico analysis of proteins'', Fortaleza, BrazilAug. 2006
UniPathway projectBioSapiens Third AGM, BarcelonaMar. 2006

Leonor Palmeira

Table 31.
TitleEvent and locationDate
Models of DNA evolution with neighbor-dependent substitutions''Otto Warburg International Summer School and Workshop 2006 on Evolutionary Genomics'', Berlin, GermanySep. 2006
Theoretical approaches for the study of dinucleotide content in genomesTheoretical Approaches for the Genome, Annecy, FranceNov. 2006

Guy Perrière

Table 32.
TitleEvent and locationDate
Automated homologous sequence identificationAnnual Meeting of the Society for Molecular Biology and Evolution, TempeMay 2006
Molecular sequence databases in the genomic age3rd Meeting of the Global U8 Consortium, University of the HavreJun. 2006

Delphine Ropers

Table 33.
TitleEvent and locationDate
Qualitative simulation of the carbon starvation response in Escherichia coli Systems Biology Workshop, ParisFeb. 2006
Qualitative simulation of the carbon starvation response in Escherichia coli Seminar of the SAFE Consortium (European Association for Food Safety), Brussels, BelgiumMar. 2006

Marie-France Sagot

Table 34.
TitleEvent and locationDate
Computational biology: Negative thoughts and (maybe) some positive actionsXV Congress of the FESPBJul. 2006

Eric Tannier

Table 35.
TitleEvent and locationDate
Conservation and Rearrangements in GenomesINRA, ToulouseMar. 2006
Conservation and Rearrangements in GenomesUniversity of Rome, ItalyOct. 2006


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