Section: Software

Keywords : proteomic data analysis.

PepLine

Participant : Alain Viari [ Correspondent ] .

PepLine is a software pipeline supporting the high-throughput analysis of proteomic data, in particular the identification of proteins from MS/MS spectra. At present, PepLine consists of two components: Taggor and PMMatch . Taggor generates so-called PSTs (Peptide Sequence Tags) from MS/MS data, while PMMatch maps the PSTs to sequences in protein databanks, or to the complete translated genome of an organism, thus helping to locate the gene coding for the protein. PepLine was developed with Estelle Nugues and Erwan Reguer through a collaboration with the Laboratoire de Chimie des Protéines headed by J. Garin at the CEA of Grenoble. For more information, see : http://www-helix.inrialpes.fr/article228.html .